Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23605 | 5' | -51 | NC_005261.1 | + | 91411 | 0.66 | 0.990222 |
Target: 5'- -cGG-CGAGGA-CGUGGAGCGCgACGc -3' miRNA: 3'- gaCCaGUUUCUgGCACUUCGUG-UGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 92794 | 0.68 | 0.961856 |
Target: 5'- -gGGUCGGGGuCCGgucgccGGGCGCGCGg -3' miRNA: 3'- gaCCAGUUUCuGGCac----UUCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 94764 | 0.67 | 0.983761 |
Target: 5'- uCUGGuUCGAGGA-CGUGgcGcCGCGCGa -3' miRNA: 3'- -GACC-AGUUUCUgGCACuuC-GUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 98710 | 0.7 | 0.924937 |
Target: 5'- gCUGGggcCGGGGuCCGgccuugGggGCACGCGg -3' miRNA: 3'- -GACCa--GUUUCuGGCa-----CuuCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 100860 | 0.76 | 0.6297 |
Target: 5'- -cGcGUCGAAGGCCGccaGAAGCGCGCGc -3' miRNA: 3'- gaC-CAGUUUCUGGCa--CUUCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 104383 | 0.73 | 0.812742 |
Target: 5'- -cGGcCGGAGGCCGaGAGGCGCGCc- -3' miRNA: 3'- gaCCaGUUUCUGGCaCUUCGUGUGca -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 105352 | 0.66 | 0.990222 |
Target: 5'- -cGGcCGugaggcAGGCCGUGAcaggcGGCGCGCGc -3' miRNA: 3'- gaCCaGUu-----UCUGGCACU-----UCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 106023 | 0.67 | 0.981729 |
Target: 5'- ----gCGAGGACCG-GAGGCACGCc- -3' miRNA: 3'- gaccaGUUUCUGGCaCUUCGUGUGca -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 112841 | 0.72 | 0.839219 |
Target: 5'- uCUGcaCGGAGAUCGUGcAGCGCGCGg -3' miRNA: 3'- -GACcaGUUUCUGGCACuUCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 114773 | 0.68 | 0.971664 |
Target: 5'- uCUGGcCcugauGAcGGCCGaGAAGCACACGa -3' miRNA: 3'- -GACCaGu----UU-CUGGCaCUUCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 115551 | 0.71 | 0.893496 |
Target: 5'- gCUGGUgcAGGuCCGUGuggcAGCACACGa -3' miRNA: 3'- -GACCAguUUCuGGCACu---UCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 128886 | 0.69 | 0.940695 |
Target: 5'- -aGG-CGGGGGCCGgguggGAGGCGgGCGUc -3' miRNA: 3'- gaCCaGUUUCUGGCa----CUUCGUgUGCA- -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 136246 | 0.67 | 0.979512 |
Target: 5'- -aGGgcaGAGGGCCGaGAgaaGGCACGCGa -3' miRNA: 3'- gaCCag-UUUCUGGCaCU---UCGUGUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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