miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 3' -61 NC_005261.1 + 123497 0.67 0.583172
Target:  5'- aCCgGGCGCa-CCAGCggcagUGCCGCgUCc -3'
miRNA:   3'- -GGgUCGCGcaGGUCGaa---GCGGCGgAG- -5'
23606 3' -61 NC_005261.1 + 123359 0.66 0.679526
Target:  5'- aCCAGCGCcucuaugcuGUCCAGCgagaggUacagcuccaugaccCGCCGCUUg -3'
miRNA:   3'- gGGUCGCG---------CAGGUCGa-----A--------------GCGGCGGAg -5'
23606 3' -61 NC_005261.1 + 123204 0.66 0.672604
Target:  5'- aCCCAGCcgccGCGUaagcgCGGCc-UGCCGCCUa -3'
miRNA:   3'- -GGGUCG----CGCAg----GUCGaaGCGGCGGAg -5'
23606 3' -61 NC_005261.1 + 122239 0.68 0.553717
Target:  5'- cCCCGaCGCGcaucagcagggCCAGCgcCGCCGCCgUCa -3'
miRNA:   3'- -GGGUcGCGCa----------GGUCGaaGCGGCGG-AG- -5'
23606 3' -61 NC_005261.1 + 121941 0.67 0.58021
Target:  5'- uUCAGCaGCG-CCAGCUUgaaccagcucgccgUGCCGCgCUCc -3'
miRNA:   3'- gGGUCG-CGCaGGUCGAA--------------GCGGCG-GAG- -5'
23606 3' -61 NC_005261.1 + 121405 0.68 0.573312
Target:  5'- gCCCgAGUGCGa-CGGCUgcCGCCGCCg- -3'
miRNA:   3'- -GGG-UCGCGCagGUCGAa-GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 121072 0.68 0.543993
Target:  5'- gUguGCGCGgcgCCGGCggcCGCCagcGCCUCc -3'
miRNA:   3'- gGguCGCGCa--GGUCGaa-GCGG---CGGAG- -5'
23606 3' -61 NC_005261.1 + 119985 0.67 0.583172
Target:  5'- cCCCGGCcgacgcuggaggGCG-CCGGCUaCGCgGCCg- -3'
miRNA:   3'- -GGGUCG------------CGCaGGUCGAaGCGgCGGag -5'
23606 3' -61 NC_005261.1 + 119680 0.66 0.69233
Target:  5'- uUCCAGCGCGU-CGGCaggUC-CCGCUcCa -3'
miRNA:   3'- -GGGUCGCGCAgGUCGa--AGcGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 118571 0.7 0.424336
Target:  5'- gCCCGcGCGCGcggCGGCgcgCGCCGCCg- -3'
miRNA:   3'- -GGGU-CGCGCag-GUCGaa-GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 118413 0.71 0.382639
Target:  5'- gCCgCAGcCGCG-CUGGCUgUCGCCGCCg- -3'
miRNA:   3'- -GG-GUC-GCGCaGGUCGA-AGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 117713 0.67 0.633837
Target:  5'- gCCGGCGCGcgggcccgcaagcggCCGcgcGCUggCGCCGCCg- -3'
miRNA:   3'- gGGUCGCGCa--------------GGU---CGAa-GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 117316 0.67 0.583172
Target:  5'- cCCCGGCGCGggCAGCaagCGCauCCUUg -3'
miRNA:   3'- -GGGUCGCGCagGUCGaa-GCGgcGGAG- -5'
23606 3' -61 NC_005261.1 + 117210 0.7 0.424336
Target:  5'- aCCGGCGCG-CCcGCUgccugggCGCCgaguccGCCUCg -3'
miRNA:   3'- gGGUCGCGCaGGuCGAa------GCGG------CGGAG- -5'
23606 3' -61 NC_005261.1 + 116709 0.67 0.632841
Target:  5'- aUCGGC-CG-CCAGCUggccgacgUCGCCGCCc- -3'
miRNA:   3'- gGGUCGcGCaGGUCGA--------AGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 116477 0.66 0.649769
Target:  5'- gCCGGCGCGggcggggCgGGCgcgcgguauaaagagCGCCGCCg- -3'
miRNA:   3'- gGGUCGCGCa------GgUCGaa-------------GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 116271 0.66 0.69233
Target:  5'- gCCCGGCggcgucgugaugGCGUCguGCUUCaCCaGCCg- -3'
miRNA:   3'- -GGGUCG------------CGCAGguCGAAGcGG-CGGag -5'
23606 3' -61 NC_005261.1 + 115863 0.78 0.139747
Target:  5'- cCCCgccgaGGCGCGcCCGGCaaucucccUCGCCGCCUCc -3'
miRNA:   3'- -GGG-----UCGCGCaGGUCGa-------AGCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 115609 0.67 0.612926
Target:  5'- cCCCAGCGaggCCAGCacgUCGCgGCa-- -3'
miRNA:   3'- -GGGUCGCgcaGGUCGa--AGCGgCGgag -5'
23606 3' -61 NC_005261.1 + 115254 0.67 0.593065
Target:  5'- aCUuGCGC-UCCAGCa-CGCCGCCg- -3'
miRNA:   3'- gGGuCGCGcAGGUCGaaGCGGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.