miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 3' -61 NC_005261.1 + 31426 0.66 0.682487
Target:  5'- gCCCGGggagGCG-CUGGCggCGCCGCC-Cg -3'
miRNA:   3'- -GGGUCg---CGCaGGUCGaaGCGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 73450 0.66 0.682487
Target:  5'- gCCGGcCGCGUCC-GCgucCGCgCGCCc- -3'
miRNA:   3'- gGGUC-GCGCAGGuCGaa-GCG-GCGGag -5'
23606 3' -61 NC_005261.1 + 98259 0.66 0.682487
Target:  5'- -gCGGCGCGUCaGGCggCGCgCGCgUUCg -3'
miRNA:   3'- ggGUCGCGCAGgUCGaaGCG-GCG-GAG- -5'
23606 3' -61 NC_005261.1 + 101825 0.66 0.682487
Target:  5'- cUCCAGCGCG--CGGCUgaUCuCCGCCg- -3'
miRNA:   3'- -GGGUCGCGCagGUCGA--AGcGGCGGag -5'
23606 3' -61 NC_005261.1 + 37481 0.66 0.682487
Target:  5'- cCCCGGCGUaUCgGGaCUUgGCCGUC-Ca -3'
miRNA:   3'- -GGGUCGCGcAGgUC-GAAgCGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 82349 0.66 0.679526
Target:  5'- gCCGGCGCacgUCGGCgucggcgcgcgcgcgCGCCGCCa- -3'
miRNA:   3'- gGGUCGCGca-GGUCGaa-------------GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 123359 0.66 0.679526
Target:  5'- aCCAGCGCcucuaugcuGUCCAGCgagaggUacagcuccaugaccCGCCGCUUg -3'
miRNA:   3'- gGGUCGCG---------CAGGUCGa-----A--------------GCGGCGGAg -5'
23606 3' -61 NC_005261.1 + 64286 0.66 0.672604
Target:  5'- -gCAGCgccGCGUCCAGCgugCGCaUGUUUCg -3'
miRNA:   3'- ggGUCG---CGCAGGUCGaa-GCG-GCGGAG- -5'
23606 3' -61 NC_005261.1 + 43432 0.66 0.672604
Target:  5'- gCCGGCGgGgagCUGGC-UCGgCGCCUg -3'
miRNA:   3'- gGGUCGCgCa--GGUCGaAGCgGCGGAg -5'
23606 3' -61 NC_005261.1 + 57763 0.66 0.672604
Target:  5'- gCCCGGCGCGaUCUggaAGCagucCGCgGCgUCg -3'
miRNA:   3'- -GGGUCGCGC-AGG---UCGaa--GCGgCGgAG- -5'
23606 3' -61 NC_005261.1 + 65529 0.66 0.672604
Target:  5'- aCCCAGCGCGgCCGcGCgggcagcagCGCgUGCCa- -3'
miRNA:   3'- -GGGUCGCGCaGGU-CGaa-------GCG-GCGGag -5'
23606 3' -61 NC_005261.1 + 70685 0.66 0.672604
Target:  5'- cUCCAGCcagGCGUCCAGCgcggC-CCGCg-- -3'
miRNA:   3'- -GGGUCG---CGCAGGUCGaa--GcGGCGgag -5'
23606 3' -61 NC_005261.1 + 106040 0.66 0.672604
Target:  5'- gCCAccGCGCuGcCCGGCccuagCGCCGCgUCg -3'
miRNA:   3'- gGGU--CGCG-CaGGUCGaa---GCGGCGgAG- -5'
23606 3' -61 NC_005261.1 + 124848 0.66 0.672604
Target:  5'- uCCUcGCGCagGUCUgcGGCgUCGUCGCCUUc -3'
miRNA:   3'- -GGGuCGCG--CAGG--UCGaAGCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 50500 0.66 0.672604
Target:  5'- cCCCAGCGCcucgcccagCCAGCgcagcagggcCGUCGUCUUg -3'
miRNA:   3'- -GGGUCGCGca-------GGUCGaa--------GCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 61537 0.66 0.672604
Target:  5'- cUCCGGCaaGCG-CC-GCggCGCCGCCg- -3'
miRNA:   3'- -GGGUCG--CGCaGGuCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 123204 0.66 0.672604
Target:  5'- aCCCAGCcgccGCGUaagcgCGGCc-UGCCGCCUa -3'
miRNA:   3'- -GGGUCG----CGCAg----GUCGaaGCGGCGGAg -5'
23606 3' -61 NC_005261.1 + 82584 0.66 0.669633
Target:  5'- gCgCAGCGCGUCCucguugcGCUgguccgggcgcgugaGCCGCCg- -3'
miRNA:   3'- -GgGUCGCGCAGGu------CGAag-------------CGGCGGag -5'
23606 3' -61 NC_005261.1 + 52457 0.66 0.666659
Target:  5'- cCCCGGCGCGcgucaggaUgcgguugcggcggcaUCGGCUgcacgaCGCCGCCUg -3'
miRNA:   3'- -GGGUCGCGC--------A---------------GGUCGAa-----GCGGCGGAg -5'
23606 3' -61 NC_005261.1 + 59436 0.66 0.662691
Target:  5'- gCCCGGCagGCG-CCGGCagcagCGCgGCCg- -3'
miRNA:   3'- -GGGUCG--CGCaGGUCGaa---GCGgCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.