miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 99530 0.68 0.818701
Target:  5'- gUGCAcCGUCGa--GGgcgCGUCCAGGCg -3'
miRNA:   3'- gACGUaGUAGCcggUCa--GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 96951 0.68 0.818701
Target:  5'- -gGCG-CAUCGGCgGGgcagcCG-CCGGGCg -3'
miRNA:   3'- gaCGUaGUAGCCGgUCa----GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 98961 0.68 0.818701
Target:  5'- -aGCGUCAggcUCGGCaggucccggagCAcGUCGUCCucGGCa -3'
miRNA:   3'- gaCGUAGU---AGCCG-----------GU-CAGCAGGu-CCG- -5'
23606 5' -56 NC_005261.1 + 89859 0.68 0.818701
Target:  5'- -gGCGUCAUCGGCgAGUacugcaUUCAGGa -3'
miRNA:   3'- gaCGUAGUAGCCGgUCAgc----AGGUCCg -5'
23606 5' -56 NC_005261.1 + 23430 0.68 0.818701
Target:  5'- gCUGCG-CGUCGgggcGCCAGUCcUCaGGGCa -3'
miRNA:   3'- -GACGUaGUAGC----CGGUCAGcAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 15338 0.68 0.809947
Target:  5'- gUGCA-CAaacgCGGCCAGgggaaagaCGUCCcGGCg -3'
miRNA:   3'- gACGUaGUa---GCCGGUCa-------GCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 12441 0.69 0.724885
Target:  5'- uUGCggCGUCGGCCGcGUCGgcgcCCcGGUa -3'
miRNA:   3'- gACGuaGUAGCCGGU-CAGCa---GGuCCG- -5'
23606 5' -56 NC_005261.1 + 19109 0.69 0.724885
Target:  5'- uUGCGg-GUCaGCCGGUCGguggggCUAGGCg -3'
miRNA:   3'- gACGUagUAGcCGGUCAGCa-----GGUCCG- -5'
23606 5' -56 NC_005261.1 + 62042 0.69 0.744594
Target:  5'- -cGCGgc-UCGGCCGG-C-UCCAGGCg -3'
miRNA:   3'- gaCGUaguAGCCGGUCaGcAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 63689 0.69 0.744594
Target:  5'- -cGCGUCAUauacagguucugCGGCguGUUGcCCAGGUc -3'
miRNA:   3'- gaCGUAGUA------------GCCGguCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 52383 0.69 0.754304
Target:  5'- -gGCcccgGUCGUCagGGCCugcaGGUCGUCgAGGCu -3'
miRNA:   3'- gaCG----UAGUAG--CCGG----UCAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 87478 0.69 0.763905
Target:  5'- -cGCGUCAgguUCGGCgCGGcCGUgCuGGCg -3'
miRNA:   3'- gaCGUAGU---AGCCG-GUCaGCAgGuCCG- -5'
23606 5' -56 NC_005261.1 + 53150 0.69 0.763905
Target:  5'- -cGCGcCGUCGcGCCGccGUCGUCgGGGUc -3'
miRNA:   3'- gaCGUaGUAGC-CGGU--CAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 60828 0.7 0.684569
Target:  5'- aUGCAggagaUCAUCGGCggcggcgaGGUCGcgcgCCGGGCc -3'
miRNA:   3'- gACGU-----AGUAGCCGg-------UCAGCa---GGUCCG- -5'
23606 5' -56 NC_005261.1 + 108160 0.7 0.694737
Target:  5'- cCUGCAgcgCGUCcGCCAGggcgCGcggccgcggcUCCGGGCg -3'
miRNA:   3'- -GACGUa--GUAGcCGGUCa---GC----------AGGUCCG- -5'
23606 5' -56 NC_005261.1 + 59311 0.7 0.694737
Target:  5'- -cGCGUCAaaccacUCGGCCAG-CGUgcgcgcccgCCGGGUc -3'
miRNA:   3'- gaCGUAGU------AGCCGGUCaGCA---------GGUCCG- -5'
23606 5' -56 NC_005261.1 + 94369 0.7 0.704851
Target:  5'- -aGCG-CA-CGGCCGGUCGauggCCAGcGCg -3'
miRNA:   3'- gaCGUaGUaGCCGGUCAGCa---GGUC-CG- -5'
23606 5' -56 NC_005261.1 + 84495 0.7 0.704851
Target:  5'- -aGCAaagaacUCGUCcuccaccagGGCCgcccAGUCGUCCAGGUc -3'
miRNA:   3'- gaCGU------AGUAG---------CCGG----UCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 43839 0.7 0.705859
Target:  5'- gCUGC-UCGgcgagggcgaggacgCGGCCGcGUCGUCCucGGCg -3'
miRNA:   3'- -GACGuAGUa--------------GCCGGU-CAGCAGGu-CCG- -5'
23606 5' -56 NC_005261.1 + 53809 0.7 0.684569
Target:  5'- -cGCcgCcUCGGCCAGaaacUCGUCCAuGCu -3'
miRNA:   3'- gaCGuaGuAGCCGGUC----AGCAGGUcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.