Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23606 | 5' | -56 | NC_005261.1 | + | 13075 | 0.68 | 0.782742 |
Target: 5'- -cGCGUCcgcCGGCCcGUCGg-CGGGCg -3' miRNA: 3'- gaCGUAGua-GCCGGuCAGCagGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 13864 | 0.68 | 0.791959 |
Target: 5'- -gGCGUCGccggCGGcCCGGUCGUaCAGGa -3' miRNA: 3'- gaCGUAGUa---GCC-GGUCAGCAgGUCCg -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 71069 | 0.68 | 0.791959 |
Target: 5'- -cGCcgCG-CGGCgGGcggggCGUCCGGGCc -3' miRNA: 3'- gaCGuaGUaGCCGgUCa----GCAGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 13117 | 0.68 | 0.796514 |
Target: 5'- -gGCGUCggCGGCCgcggggcgcguguGGUCGgugacggcgcgcaCCAGGCg -3' miRNA: 3'- gaCGUAGuaGCCGG-------------UCAGCa------------GGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 108458 | 0.68 | 0.801031 |
Target: 5'- -cGCGUCGUCGGCgAGgaucuccgCGUC--GGCg -3' miRNA: 3'- gaCGUAGUAGCCGgUCa-------GCAGguCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 60344 | 0.68 | 0.801031 |
Target: 5'- uUGCGgcgCcgCGGCCGcgCG-CCAGGCa -3' miRNA: 3'- gACGUa--GuaGCCGGUcaGCaGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 15338 | 0.68 | 0.809947 |
Target: 5'- gUGCA-CAaacgCGGCCAGgggaaagaCGUCCcGGCg -3' miRNA: 3'- gACGUaGUa---GCCGGUCa-------GCAGGuCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 89859 | 0.68 | 0.818701 |
Target: 5'- -gGCGUCAUCGGCgAGUacugcaUUCAGGa -3' miRNA: 3'- gaCGUAGUAGCCGgUCAgc----AGGUCCg -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 98961 | 0.68 | 0.818701 |
Target: 5'- -aGCGUCAggcUCGGCaggucccggagCAcGUCGUCCucGGCa -3' miRNA: 3'- gaCGUAGU---AGCCG-----------GU-CAGCAGGu-CCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 96951 | 0.68 | 0.818701 |
Target: 5'- -gGCG-CAUCGGCgGGgcagcCG-CCGGGCg -3' miRNA: 3'- gaCGUaGUAGCCGgUCa----GCaGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 99530 | 0.68 | 0.818701 |
Target: 5'- gUGCAcCGUCGa--GGgcgCGUCCAGGCg -3' miRNA: 3'- gACGUaGUAGCcggUCa--GCAGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 23430 | 0.68 | 0.818701 |
Target: 5'- gCUGCG-CGUCGgggcGCCAGUCcUCaGGGCa -3' miRNA: 3'- -GACGUaGUAGC----CGGUCAGcAGgUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 105408 | 0.67 | 0.827282 |
Target: 5'- -cGCucgaCGUagGGCUcGUCGUCCAGGUa -3' miRNA: 3'- gaCGua--GUAg-CCGGuCAGCAGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 115752 | 0.67 | 0.827282 |
Target: 5'- -cGCAcacgUCGUCGGCCc--CGUCUcGGCg -3' miRNA: 3'- gaCGU----AGUAGCCGGucaGCAGGuCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 124865 | 0.67 | 0.827282 |
Target: 5'- -gGCGUCGUC-GCCuucGUCGUCU-GGCc -3' miRNA: 3'- gaCGUAGUAGcCGGu--CAGCAGGuCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 104051 | 0.67 | 0.827282 |
Target: 5'- aCUGCcgCAgcgccUCGGCCgcgAGcgCGUCCAgcucGGCg -3' miRNA: 3'- -GACGuaGU-----AGCCGG---UCa-GCAGGU----CCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 4152 | 0.67 | 0.835684 |
Target: 5'- gCUGCAgCAggCGcGCCAGcugcagGUCCGGGCc -3' miRNA: 3'- -GACGUaGUa-GC-CGGUCag----CAGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 106537 | 0.67 | 0.835684 |
Target: 5'- -cGCcUCcUCGGCggCGGccgCGUCCGGGCc -3' miRNA: 3'- gaCGuAGuAGCCG--GUCa--GCAGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 99920 | 0.67 | 0.843899 |
Target: 5'- -aGCG-CcUCGGCCAGgacacCGUCCAGcGUc -3' miRNA: 3'- gaCGUaGuAGCCGGUCa----GCAGGUC-CG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 115541 | 0.67 | 0.843899 |
Target: 5'- -aGCAUCggCGGCUGGUgcagGUCCGuguGGCa -3' miRNA: 3'- gaCGUAGuaGCCGGUCAg---CAGGU---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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