Results 81 - 84 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23606 | 5' | -56 | NC_005261.1 | + | 58350 | 0.66 | 0.902077 |
Target: 5'- -aGCcgCGcCGGCCA---GUCCAGGUg -3' miRNA: 3'- gaCGuaGUaGCCGGUcagCAGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 87559 | 0.66 | 0.902077 |
Target: 5'- -gGCGUCAgcUUGGCCGucagccccgcGcCGcCCAGGCc -3' miRNA: 3'- gaCGUAGU--AGCCGGU----------CaGCaGGUCCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 87383 | 0.66 | 0.902077 |
Target: 5'- -gGCAgaugUCcUCGGCC-GUCGUCUcgacGGCg -3' miRNA: 3'- gaCGU----AGuAGCCGGuCAGCAGGu---CCG- -5' |
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23606 | 5' | -56 | NC_005261.1 | + | 102831 | 0.66 | 0.904607 |
Target: 5'- uCUGCGccUCGcgccgcgccacgugcUgGGCCAGcagcgCGUCCAGGa -3' miRNA: 3'- -GACGU--AGU---------------AgCCGGUCa----GCAGGUCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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