miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 53809 0.7 0.684569
Target:  5'- -cGCcgCcUCGGCCAGaaacUCGUCCAuGCu -3'
miRNA:   3'- gaCGuaGuAGCCGGUC----AGCAGGUcCG- -5'
23606 5' -56 NC_005261.1 + 62100 0.7 0.674358
Target:  5'- gCUGCAcgauggCGUUGGCCAcGcCGUCCugcAGGCc -3'
miRNA:   3'- -GACGUa-----GUAGCCGGU-CaGCAGG---UCCG- -5'
23606 5' -56 NC_005261.1 + 59685 0.7 0.674358
Target:  5'- -aGCcgCccUCGGCCAGcacgCGcUCCGGGCa -3'
miRNA:   3'- gaCGuaGu-AGCCGGUCa---GC-AGGUCCG- -5'
23606 5' -56 NC_005261.1 + 19400 0.7 0.668213
Target:  5'- -gGCucgGUgAUCGGCCcgugugccgcgccgaAGUCGcCCAGGCa -3'
miRNA:   3'- gaCG---UAgUAGCCGG---------------UCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 118349 0.7 0.664111
Target:  5'- gCUGC-UCcUCGGCCucUCGgCCGGGCg -3'
miRNA:   3'- -GACGuAGuAGCCGGucAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 19700 0.71 0.643548
Target:  5'- -aGCAUCAuggccUCaGCCAG-CGUCgAGGCc -3'
miRNA:   3'- gaCGUAGU-----AGcCGGUCaGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 1989 0.71 0.643548
Target:  5'- -gGcCAUCggCGGCCAGUUcgcgggGUCCAcGGCg -3'
miRNA:   3'- gaC-GUAGuaGCCGGUCAG------CAGGU-CCG- -5'
23606 5' -56 NC_005261.1 + 81432 0.71 0.622949
Target:  5'- -gGCGUCGUCGGCCGccccgCGg-CGGGCg -3'
miRNA:   3'- gaCGUAGUAGCCGGUca---GCagGUCCG- -5'
23606 5' -56 NC_005261.1 + 103314 0.72 0.592122
Target:  5'- cCUGCAg---CGGCagcagCAGcgCGUCCAGGCg -3'
miRNA:   3'- -GACGUaguaGCCG-----GUCa-GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 64165 0.72 0.592122
Target:  5'- -cGCAUCG-CGuGCaGGUgGUCCGGGCa -3'
miRNA:   3'- gaCGUAGUaGC-CGgUCAgCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 14070 0.72 0.592122
Target:  5'- -cGCGUCcagggccacGUCGGCgaagcacucgCGGUCGUCgAGGCa -3'
miRNA:   3'- gaCGUAG---------UAGCCG----------GUCAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 72838 0.72 0.581895
Target:  5'- -gGCG--GUCGGCCAGggcgccagCGcCCAGGCg -3'
miRNA:   3'- gaCGUagUAGCCGGUCa-------GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 107360 0.72 0.581895
Target:  5'- cCUGCGUCGUCGugggcGCCGGggcgcccgCGUCCAcgaacGGCc -3'
miRNA:   3'- -GACGUAGUAGC-----CGGUCa-------GCAGGU-----CCG- -5'
23606 5' -56 NC_005261.1 + 106102 0.72 0.551462
Target:  5'- -cGCGaCGUCGGCCGG-CGUCgCcGGCg -3'
miRNA:   3'- gaCGUaGUAGCCGGUCaGCAG-GuCCG- -5'
23606 5' -56 NC_005261.1 + 74276 0.73 0.531442
Target:  5'- -cGCGUCcgCGGCgggcggggCGGUCGccgCCGGGCa -3'
miRNA:   3'- gaCGUAGuaGCCG--------GUCAGCa--GGUCCG- -5'
23606 5' -56 NC_005261.1 + 82047 0.73 0.50193
Target:  5'- gUGCGUCAgcgCgGGCCAcGUCG-CCGGGUc -3'
miRNA:   3'- gACGUAGUa--G-CCGGU-CAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 3426 0.74 0.482659
Target:  5'- -aGCG-CGcgGGCCAG-CGUCCAGGCg -3'
miRNA:   3'- gaCGUaGUagCCGGUCaGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 126922 0.75 0.421806
Target:  5'- uCUGCAUCcguuccagcagcgCGGCCAGgggCG-CCGGGCg -3'
miRNA:   3'- -GACGUAGua-----------GCCGGUCa--GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 18050 0.75 0.418267
Target:  5'- -cGUaAUCGcCGGUCgAGUCGUCCAGGCc -3'
miRNA:   3'- gaCG-UAGUaGCCGG-UCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 106656 0.76 0.359378
Target:  5'- -cGCGcUCGcCGGCgCGGUCGUCCAGcGCg -3'
miRNA:   3'- gaCGU-AGUaGCCG-GUCAGCAGGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.