miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 54341 0.66 0.895588
Target:  5'- -cGCGUaCAggucgaUGGCCAGUCccagGUCCgcGGGCa -3'
miRNA:   3'- gaCGUA-GUa-----GCCGGUCAG----CAGG--UCCG- -5'
23606 5' -56 NC_005261.1 + 107535 0.66 0.901439
Target:  5'- -cGCGUCggCGGCCAccagcaCGUCCGagagcacGGCa -3'
miRNA:   3'- gaCGUAGuaGCCGGUca----GCAGGU-------CCG- -5'
23606 5' -56 NC_005261.1 + 58350 0.66 0.902077
Target:  5'- -aGCcgCGcCGGCCA---GUCCAGGUg -3'
miRNA:   3'- gaCGuaGUaGCCGGUcagCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 87559 0.66 0.902077
Target:  5'- -gGCGUCAgcUUGGCCGucagccccgcGcCGcCCAGGCc -3'
miRNA:   3'- gaCGUAGU--AGCCGGU----------CaGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 87383 0.66 0.902077
Target:  5'- -gGCAgaugUCcUCGGCC-GUCGUCUcgacGGCg -3'
miRNA:   3'- gaCGU----AGuAGCCGGuCAGCAGGu---CCG- -5'
23606 5' -56 NC_005261.1 + 122286 0.66 0.881916
Target:  5'- -aGCAUCAgcgCGGCCccgcugccgcAGgcgaCGcCCGGGCc -3'
miRNA:   3'- gaCGUAGUa--GCCGG----------UCa---GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 100989 0.66 0.874741
Target:  5'- -cGCGUCGccgcgcUCcGCCAGccgcgCGUCCAGcGCg -3'
miRNA:   3'- gaCGUAGU------AGcCGGUCa----GCAGGUC-CG- -5'
23606 5' -56 NC_005261.1 + 105408 0.67 0.827282
Target:  5'- -cGCucgaCGUagGGCUcGUCGUCCAGGUa -3'
miRNA:   3'- gaCGua--GUAg-CCGGuCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 4152 0.67 0.835684
Target:  5'- gCUGCAgCAggCGcGCCAGcugcagGUCCGGGCc -3'
miRNA:   3'- -GACGUaGUa-GC-CGGUCag----CAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 106537 0.67 0.835684
Target:  5'- -cGCcUCcUCGGCggCGGccgCGUCCGGGCc -3'
miRNA:   3'- gaCGuAGuAGCCG--GUCa--GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 99920 0.67 0.843899
Target:  5'- -aGCG-CcUCGGCCAGgacacCGUCCAGcGUc -3'
miRNA:   3'- gaCGUaGuAGCCGGUCa----GCAGGUC-CG- -5'
23606 5' -56 NC_005261.1 + 115541 0.67 0.843899
Target:  5'- -aGCAUCggCGGCUGGUgcagGUCCGuguGGCa -3'
miRNA:   3'- gaCGUAGuaGCCGGUCAg---CAGGU---CCG- -5'
23606 5' -56 NC_005261.1 + 81323 0.67 0.843899
Target:  5'- -gGgGUCGUC-GCC-GUCGUCgGGGCc -3'
miRNA:   3'- gaCgUAGUAGcCGGuCAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 87024 0.67 0.843899
Target:  5'- -cGCGgccCcgCGcGCCAccgCGUCCAGGCu -3'
miRNA:   3'- gaCGUa--GuaGC-CGGUca-GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 92793 0.67 0.843899
Target:  5'- -gGgGUCGg-GGuCCGGUCG-CCGGGCg -3'
miRNA:   3'- gaCgUAGUagCC-GGUCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 35010 0.67 0.851918
Target:  5'- cCUGCGgug-CGGCCGG-CGUCUcGGUc -3'
miRNA:   3'- -GACGUaguaGCCGGUCaGCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 104334 0.67 0.859736
Target:  5'- -cGCGUCcagCGGCCGGcCGUCgcgCAGcGCc -3'
miRNA:   3'- gaCGUAGua-GCCGGUCaGCAG---GUC-CG- -5'
23606 5' -56 NC_005261.1 + 103497 0.66 0.867345
Target:  5'- -aGaCGUCGUCGGCgccgcggacggCGG-CGUCCGcGGCa -3'
miRNA:   3'- gaC-GUAGUAGCCG-----------GUCaGCAGGU-CCG- -5'
23606 5' -56 NC_005261.1 + 20028 0.66 0.874741
Target:  5'- -cGCgGUCAgcgGGCCGGUucCGUCC-GGCg -3'
miRNA:   3'- gaCG-UAGUag-CCGGUCA--GCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 136933 0.66 0.874741
Target:  5'- -cGCAUguggugguaCAUgGGCCGcGUCGU-CGGGCa -3'
miRNA:   3'- gaCGUA---------GUAgCCGGU-CAGCAgGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.