miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23608 5' -61.6 NC_005261.1 + 129560 0.66 0.685393
Target:  5'- aAGACGgCGGGCGuagaggaggaGGCggccgcgcgCCGCGggacacgCGGCa -3'
miRNA:   3'- -UCUGUgGCUCGC----------CCGa--------GGCGCa------GCCG- -5'
23608 5' -61.6 NC_005261.1 + 522 0.66 0.685393
Target:  5'- aGGGCG-CGGGCGGGCggggggCaggGCGgacggCGGCu -3'
miRNA:   3'- -UCUGUgGCUCGCCCGa-----Gg--CGCa----GCCG- -5'
23608 5' -61.6 NC_005261.1 + 98838 0.66 0.685393
Target:  5'- gGGugGgCGuacAGCGGGUcgCCGCuugCGGCg -3'
miRNA:   3'- -UCugUgGC---UCGCCCGa-GGCGca-GCCG- -5'
23608 5' -61.6 NC_005261.1 + 104716 0.66 0.685393
Target:  5'- uGGACgGCCGAG-GGcGCgucgugCCGCGUgCGcGCg -3'
miRNA:   3'- -UCUG-UGGCUCgCC-CGa-----GGCGCA-GC-CG- -5'
23608 5' -61.6 NC_005261.1 + 138193 0.66 0.685393
Target:  5'- aGGGCG-CGGGCGGGCggggggCaggGCGgacggCGGCu -3'
miRNA:   3'- -UCUGUgGCUCGCCCGa-----Gg--CGCa----GCCG- -5'
23608 5' -61.6 NC_005261.1 + 84915 0.66 0.685393
Target:  5'- -cACAccuCCGGGCGGGcCUCgGCcUCGcGCa -3'
miRNA:   3'- ucUGU---GGCUCGCCC-GAGgCGcAGC-CG- -5'
23608 5' -61.6 NC_005261.1 + 85577 0.66 0.685393
Target:  5'- cGGCGCCGcgaccGCGGcCUCCGCGagcgucaCGGUc -3'
miRNA:   3'- uCUGUGGCu----CGCCcGAGGCGCa------GCCG- -5'
23608 5' -61.6 NC_005261.1 + 99446 0.66 0.685393
Target:  5'- cGGGCGgaaGAgcGCGGGCcgacCCGCGgCGGCg -3'
miRNA:   3'- -UCUGUgg-CU--CGCCCGa---GGCGCaGCCG- -5'
23608 5' -61.6 NC_005261.1 + 105217 0.66 0.685393
Target:  5'- --cCGCCGcGCGGGC--CGCGgccgCGGCc -3'
miRNA:   3'- ucuGUGGCuCGCCCGagGCGCa---GCCG- -5'
23608 5' -61.6 NC_005261.1 + 125897 0.66 0.684419
Target:  5'- aAGGCGCCuGAGCcagauguguggcgGGGCUCgccaCGCGcaCGGUa -3'
miRNA:   3'- -UCUGUGG-CUCG-------------CCCGAG----GCGCa-GCCG- -5'
23608 5' -61.6 NC_005261.1 + 30186 0.66 0.682471
Target:  5'- -cGCGCCGAgGCGgccgccgcgcuggaGGCggCCGCGcuggCGGCg -3'
miRNA:   3'- ucUGUGGCU-CGC--------------CCGa-GGCGCa---GCCG- -5'
23608 5' -61.6 NC_005261.1 + 136593 0.66 0.675642
Target:  5'- gAGACGCCcggcgcagcgugGAGCGGcGCgCgCGCGccgagggCGGCg -3'
miRNA:   3'- -UCUGUGG------------CUCGCC-CGaG-GCGCa------GCCG- -5'
23608 5' -61.6 NC_005261.1 + 119904 0.66 0.675642
Target:  5'- uGGCGCCGcgacGCGGGCgCCaaGUCGcaGCg -3'
miRNA:   3'- uCUGUGGCu---CGCCCGaGGcgCAGC--CG- -5'
23608 5' -61.6 NC_005261.1 + 32468 0.66 0.675642
Target:  5'- cGGGCACgGAcuCGGGCUucCCGgGgcCGGCg -3'
miRNA:   3'- -UCUGUGgCUc-GCCCGA--GGCgCa-GCCG- -5'
23608 5' -61.6 NC_005261.1 + 69778 0.66 0.675642
Target:  5'- cGGGgACUGAGCc-GCUcCCGCGgcgcgCGGCg -3'
miRNA:   3'- -UCUgUGGCUCGccCGA-GGCGCa----GCCG- -5'
23608 5' -61.6 NC_005261.1 + 75876 0.66 0.675642
Target:  5'- cGGCGCC--GUGGGCg-CGCGcagCGGCg -3'
miRNA:   3'- uCUGUGGcuCGCCCGagGCGCa--GCCG- -5'
23608 5' -61.6 NC_005261.1 + 83557 0.66 0.675642
Target:  5'- cGAagaACUcGGCGGGCgugcCCGCGgcgcccgCGGCc -3'
miRNA:   3'- uCUg--UGGcUCGCCCGa---GGCGCa------GCCG- -5'
23608 5' -61.6 NC_005261.1 + 90871 0.66 0.675642
Target:  5'- cGACGCCGucuGCGcGCUggGCGaCGGCa -3'
miRNA:   3'- uCUGUGGCu--CGCcCGAggCGCaGCCG- -5'
23608 5' -61.6 NC_005261.1 + 132112 0.66 0.675642
Target:  5'- cGACGCgcucgugGAGCGGGa--CGCG-CGGCu -3'
miRNA:   3'- uCUGUGg------CUCGCCCgagGCGCaGCCG- -5'
23608 5' -61.6 NC_005261.1 + 94431 0.66 0.674665
Target:  5'- cGGCGCCGccccccuccccguccGCGuccgcguccccCUCCGCGUCGGCg -3'
miRNA:   3'- uCUGUGGCu--------------CGCcc---------GAGGCGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.