miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 122034 0.67 0.654221
Target:  5'- -uGCGCGaaGC-GGcACUGCGCGCGGAu -3'
miRNA:   3'- guCGUGCc-CGaCCuUGACGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 120661 0.67 0.654221
Target:  5'- aGGCGCGGGCgcgccUGuGAuCUcGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCG-----AC-CUuGA-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 136600 0.67 0.654221
Target:  5'- cCGGCGCa-GCgUGGAGCgGCGCGCGc- -3'
miRNA:   3'- -GUCGUGccCG-ACCUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 111610 0.67 0.654221
Target:  5'- gGGCGC-GGCUGG-GCUGCgGCGCc-- -3'
miRNA:   3'- gUCGUGcCCGACCuUGACG-CGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 81767 0.67 0.654221
Target:  5'- aCGGCGCGGGCcaGGACgaGCuCGCGGAu -3'
miRNA:   3'- -GUCGUGCCCGacCUUGa-CGcGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 71963 0.67 0.654221
Target:  5'- uCGGCGCgGGGCgcGGA---GCGCGCGGc -3'
miRNA:   3'- -GUCGUG-CCCGa-CCUugaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 21808 0.67 0.654221
Target:  5'- cCGGC-CGGGCcGGGcccGCggcggGCGCGCGu- -3'
miRNA:   3'- -GUCGuGCCCGaCCU---UGa----CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 43354 0.67 0.654221
Target:  5'- -uGcCugGGGCUGGugccGCUGCG-GCGGc -3'
miRNA:   3'- guC-GugCCCGACCu---UGACGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 29924 0.67 0.654221
Target:  5'- -uGCGCGaGCUGGcggacGCUGCGCuGCGGc -3'
miRNA:   3'- guCGUGCcCGACCu----UGACGCG-CGCUu -5'
23609 3' -59.7 NC_005261.1 + 48204 0.67 0.644011
Target:  5'- gGGCGCGGGCcGGcGCgcguuucagaGCGCGCa-- -3'
miRNA:   3'- gUCGUGCCCGaCCuUGa---------CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 127214 0.67 0.644011
Target:  5'- gCGGCGCGcGGCUuaAGCcGCGCGCGu- -3'
miRNA:   3'- -GUCGUGC-CCGAccUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 71485 0.68 0.572714
Target:  5'- cCGGUGCGcGGC-GGccAGgUGCGCGCGAAa -3'
miRNA:   3'- -GUCGUGC-CCGaCC--UUgACGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 1918 0.68 0.582829
Target:  5'- cCAGCGCGcGGCgc--ACUGCGcCGCGGg -3'
miRNA:   3'- -GUCGUGC-CCGaccuUGACGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 80067 0.68 0.582829
Target:  5'- gGGCGCgggGGGCguggGGGACgcggaccgGCGCGCGc- -3'
miRNA:   3'- gUCGUG---CCCGa---CCUUGa-------CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 113306 0.68 0.582829
Target:  5'- -uGcCGCGGGcCUGGGcccgGCUGCGCGaGAAg -3'
miRNA:   3'- guC-GUGCCC-GACCU----UGACGCGCgCUU- -5'
23609 3' -59.7 NC_005261.1 + 133228 0.68 0.586885
Target:  5'- gAGCugGGGCccuacauggcGGAGCacuacccgcaggcgGCGCGCGAGu -3'
miRNA:   3'- gUCGugCCCGa---------CCUUGa-------------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 44293 0.68 0.592979
Target:  5'- cCAGCgGCGGGCcaGGGccGCUGCcCGCGGg -3'
miRNA:   3'- -GUCG-UGCCCGa-CCU--UGACGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 74046 0.68 0.592979
Target:  5'- cCAGCGCgccgggGGGCUGcGGcaGCUGCGCGaCGc- -3'
miRNA:   3'- -GUCGUG------CCCGAC-CU--UGACGCGC-GCuu -5'
23609 3' -59.7 NC_005261.1 + 97441 0.68 0.592979
Target:  5'- gGGCGCGGGuCUGGGcuucgGCgGCGC-CGGGa -3'
miRNA:   3'- gUCGUGCCC-GACCU-----UGaCGCGcGCUU- -5'
23609 3' -59.7 NC_005261.1 + 33834 0.68 0.572714
Target:  5'- gGGCGCGGGCccccUGGcGCUGgGCGgGc- -3'
miRNA:   3'- gUCGUGCCCG----ACCuUGACgCGCgCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.