miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 97627 0.68 0.592979
Target:  5'- gGGCggaGCGGGC-GGAGC-GgGCGCGGGu -3'
miRNA:   3'- gUCG---UGCCCGaCCUUGaCgCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 97441 0.68 0.592979
Target:  5'- gGGCGCGGGuCUGGGcuucgGCgGCGC-CGGGa -3'
miRNA:   3'- gUCGUGCCC-GACCU-----UGaCGCGcGCUU- -5'
23609 3' -59.7 NC_005261.1 + 74046 0.68 0.592979
Target:  5'- cCAGCGCgccgggGGGCUGcGGcaGCUGCGCGaCGc- -3'
miRNA:   3'- -GUCGUG------CCCGAC-CU--UGACGCGC-GCuu -5'
23609 3' -59.7 NC_005261.1 + 44293 0.68 0.592979
Target:  5'- cCAGCgGCGGGCcaGGGccGCUGCcCGCGGg -3'
miRNA:   3'- -GUCG-UGCCCGa-CCU--UGACGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 133228 0.68 0.586885
Target:  5'- gAGCugGGGCccuacauggcGGAGCacuacccgcaggcgGCGCGCGAGu -3'
miRNA:   3'- gUCGugCCCGa---------CCUUGa-------------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 113306 0.68 0.582829
Target:  5'- -uGcCGCGGGcCUGGGcccgGCUGCGCGaGAAg -3'
miRNA:   3'- guC-GUGCCC-GACCU----UGACGCGCgCUU- -5'
23609 3' -59.7 NC_005261.1 + 23506 0.69 0.522893
Target:  5'- aGGCGCGGGCccugGGAGCacgcgGuCGgGCGAGc -3'
miRNA:   3'- gUCGUGCCCGa---CCUUGa----C-GCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 39891 0.69 0.522893
Target:  5'- -cGCGCGcGGCUGuGcAGCUggcGCGCGCGGc -3'
miRNA:   3'- guCGUGC-CCGAC-C-UUGA---CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 105122 0.69 0.513119
Target:  5'- -cGCGCGGGCgcGGGccGCcgGCGCGCGc- -3'
miRNA:   3'- guCGUGCCCGa-CCU--UGa-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 9148 0.69 0.513119
Target:  5'- aGGCAaauCGGGCUGGGACcugGCGcCGCc-- -3'
miRNA:   3'- gUCGU---GCCCGACCUUGa--CGC-GCGcuu -5'
23609 3' -59.7 NC_005261.1 + 74918 0.69 0.504388
Target:  5'- -cGCGCGGGggagggcgaggacgGGGACUGCGgCGCGGg -3'
miRNA:   3'- guCGUGCCCga------------CCUUGACGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 64498 0.69 0.503421
Target:  5'- uGGCGCGGGUgcucGGGGCccGCGgGCGGc -3'
miRNA:   3'- gUCGUGCCCGa---CCUUGa-CGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 75825 0.69 0.522893
Target:  5'- cCGGCGCGGccGCgcccggGGAGggGCGCGCGGc -3'
miRNA:   3'- -GUCGUGCC--CGa-----CCUUgaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 135659 0.69 0.528791
Target:  5'- gGGCGCGGGCggcccucgcucgaGGAGCUcugcGCcGCGCGGc -3'
miRNA:   3'- gUCGUGCCCGa------------CCUUGA----CG-CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 38172 0.69 0.532737
Target:  5'- gCAGCACGGcugcCUGGAGgcCUGgGCGCGc- -3'
miRNA:   3'- -GUCGUGCCc---GACCUU--GACgCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 1725 0.69 0.532737
Target:  5'- gCGGCACGGGCacc-GCgGUGCGCGGg -3'
miRNA:   3'- -GUCGUGCCCGaccuUGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 125371 0.69 0.532737
Target:  5'- gGGCAgaggGGcGCUGGAACgggUGCGUGCGGu -3'
miRNA:   3'- gUCGUg---CC-CGACCUUG---ACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 13029 0.69 0.532737
Target:  5'- cCAGCACcacgagccaGGGCgcGGGGCcGCGCGCGc- -3'
miRNA:   3'- -GUCGUG---------CCCGa-CCUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 107263 0.69 0.532737
Target:  5'- -cGCGCGGGCacGGGCggGCGCGCa-- -3'
miRNA:   3'- guCGUGCCCGacCUUGa-CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 62832 0.69 0.503421
Target:  5'- gGGCACcGGCggGGGACUgGCGCGCc-- -3'
miRNA:   3'- gUCGUGcCCGa-CCUUGA-CGCGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.