Results 81 - 100 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 125371 | 0.69 | 0.532737 |
Target: 5'- gGGCAgaggGGcGCUGGAACgggUGCGUGCGGu -3' miRNA: 3'- gUCGUg---CC-CGACCUUG---ACGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 1725 | 0.69 | 0.532737 |
Target: 5'- gCGGCACGGGCacc-GCgGUGCGCGGg -3' miRNA: 3'- -GUCGUGCCCGaccuUGaCGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 38172 | 0.69 | 0.532737 |
Target: 5'- gCAGCACGGcugcCUGGAGgcCUGgGCGCGc- -3' miRNA: 3'- -GUCGUGCCc---GACCUU--GACgCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 135659 | 0.69 | 0.528791 |
Target: 5'- gGGCGCGGGCggcccucgcucgaGGAGCUcugcGCcGCGCGGc -3' miRNA: 3'- gUCGUGCCCGa------------CCUUGA----CG-CGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 75825 | 0.69 | 0.522893 |
Target: 5'- cCGGCGCGGccGCgcccggGGAGggGCGCGCGGc -3' miRNA: 3'- -GUCGUGCC--CGa-----CCUUgaCGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 23506 | 0.69 | 0.522893 |
Target: 5'- aGGCGCGGGCccugGGAGCacgcgGuCGgGCGAGc -3' miRNA: 3'- gUCGUGCCCGa---CCUUGa----C-GCgCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 98050 | 0.7 | 0.429075 |
Target: 5'- gCGGcCGCGGGCggcGGGACcGCGgGCGGc -3' miRNA: 3'- -GUC-GUGCCCGa--CCUUGaCGCgCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 123153 | 0.7 | 0.429075 |
Target: 5'- aGGCAUacgaGGGC-GGGGCggGCGCGCGGg -3' miRNA: 3'- gUCGUG----CCCGaCCUUGa-CGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 17170 | 0.7 | 0.438019 |
Target: 5'- gCGGCGCGGGCgUGGGcagccCUGC-CGCGGc -3' miRNA: 3'- -GUCGUGCCCG-ACCUu----GACGcGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 13688 | 0.7 | 0.44707 |
Target: 5'- -cGCGCGGGCgUGGGGCgggGCGgGCu-- -3' miRNA: 3'- guCGUGCCCG-ACCUUGa--CGCgCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 38941 | 0.7 | 0.44707 |
Target: 5'- gCGGC-CGGGC-GGGccGCgGCGCGCGGg -3' miRNA: 3'- -GUCGuGCCCGaCCU--UGaCGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 92134 | 0.7 | 0.44707 |
Target: 5'- aUAGCuCGGGCUGGGccaggaccucgGCgaGCGCGCGc- -3' miRNA: 3'- -GUCGuGCCCGACCU-----------UGa-CGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 36981 | 0.7 | 0.456225 |
Target: 5'- uCGGUGCGGGCUccagccGGAgcccgcggGCUGCGCGgGGc -3' miRNA: 3'- -GUCGUGCCCGA------CCU--------UGACGCGCgCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 3400 | 0.7 | 0.465478 |
Target: 5'- cCGGCacuuccgccgGCGGGCU-GAAgaGCGCGCGGg -3' miRNA: 3'- -GUCG----------UGCCCGAcCUUgaCGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 63081 | 0.7 | 0.474829 |
Target: 5'- aCAGCgGCGGGUacgccuccUGGAAgaGCGCGCa-- -3' miRNA: 3'- -GUCG-UGCCCG--------ACCUUgaCGCGCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 93466 | 0.7 | 0.478595 |
Target: 5'- cCAGCGCGGuGCcgGGGcgcgcgucgcccgcgGCgaaGCGCGCGAAc -3' miRNA: 3'- -GUCGUGCC-CGa-CCU---------------UGa--CGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 12640 | 0.71 | 0.411513 |
Target: 5'- cCGGCGCGGuCUGGGGCcGCgccgGCGCGAc -3' miRNA: 3'- -GUCGUGCCcGACCUUGaCG----CGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 49567 | 0.71 | 0.411513 |
Target: 5'- gCAGCAUGGGCgugaacacgGGcuCgggGCGCGCGGc -3' miRNA: 3'- -GUCGUGCCCGa--------CCuuGa--CGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 29813 | 0.71 | 0.419361 |
Target: 5'- gCGGCGCGGGCgcccGcgccgcgcucgccGAGCUGCGCGCc-- -3' miRNA: 3'- -GUCGUGCCCGa---C-------------CUUGACGCGCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 38520 | 0.71 | 0.4029 |
Target: 5'- aGGCGCGcGCUGG--CUGCGCGCGc- -3' miRNA: 3'- gUCGUGCcCGACCuuGACGCGCGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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