Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 32550 | 0.71 | 0.386023 |
Target: 5'- gCGGCGCGGGCcGGc---GCGCGUGGAa -3' miRNA: 3'- -GUCGUGCCCGaCCuugaCGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 29813 | 0.71 | 0.419361 |
Target: 5'- gCGGCGCGGGCgcccGcgccgcgcucgccGAGCUGCGCGCc-- -3' miRNA: 3'- -GUCGUGCCCGa---C-------------CUUGACGCGCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 49567 | 0.71 | 0.411513 |
Target: 5'- gCAGCAUGGGCgugaacacgGGcuCgggGCGCGCGGc -3' miRNA: 3'- -GUCGUGCCCGa--------CCuuGa--CGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 110245 | 0.71 | 0.420238 |
Target: 5'- gCGGCGCGGcGCccggGGGGCUGCGgGCc-- -3' miRNA: 3'- -GUCGUGCC-CGa---CCUUGACGCgCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 38520 | 0.71 | 0.4029 |
Target: 5'- aGGCGCGcGCUGG--CUGCGCGCGc- -3' miRNA: 3'- gUCGUGCcCGACCuuGACGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 89109 | 0.71 | 0.4029 |
Target: 5'- uGGCGCGcGCgUGGcACUGCGCGCGc- -3' miRNA: 3'- gUCGUGCcCG-ACCuUGACGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 12640 | 0.71 | 0.411513 |
Target: 5'- cCGGCGCGGuCUGGGGCcGCgccgGCGCGAc -3' miRNA: 3'- -GUCGUGCCcGACCUUGaCG----CGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 13688 | 0.7 | 0.44707 |
Target: 5'- -cGCGCGGGCgUGGGGCgggGCGgGCu-- -3' miRNA: 3'- guCGUGCCCG-ACCUUGa--CGCgCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 123153 | 0.7 | 0.429075 |
Target: 5'- aGGCAUacgaGGGC-GGGGCggGCGCGCGGg -3' miRNA: 3'- gUCGUG----CCCGaCCUUGa-CGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 98050 | 0.7 | 0.429075 |
Target: 5'- gCGGcCGCGGGCggcGGGACcGCGgGCGGc -3' miRNA: 3'- -GUC-GUGCCCGa--CCUUGaCGCgCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 17170 | 0.7 | 0.438019 |
Target: 5'- gCGGCGCGGGCgUGGGcagccCUGC-CGCGGc -3' miRNA: 3'- -GUCGUGCCCG-ACCUu----GACGcGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 38941 | 0.7 | 0.44707 |
Target: 5'- gCGGC-CGGGC-GGGccGCgGCGCGCGGg -3' miRNA: 3'- -GUCGuGCCCGaCCU--UGaCGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 93466 | 0.7 | 0.478595 |
Target: 5'- cCAGCGCGGuGCcgGGGcgcgcgucgcccgcgGCgaaGCGCGCGAAc -3' miRNA: 3'- -GUCGUGCC-CGa-CCU---------------UGa--CGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 92134 | 0.7 | 0.44707 |
Target: 5'- aUAGCuCGGGCUGGGccaggaccucgGCgaGCGCGCGc- -3' miRNA: 3'- -GUCGuGCCCGACCU-----------UGa-CGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 36981 | 0.7 | 0.456225 |
Target: 5'- uCGGUGCGGGCUccagccGGAgcccgcggGCUGCGCGgGGc -3' miRNA: 3'- -GUCGUGCCCGA------CCU--------UGACGCGCgCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 3400 | 0.7 | 0.465478 |
Target: 5'- cCGGCacuuccgccgGCGGGCU-GAAgaGCGCGCGGg -3' miRNA: 3'- -GUCG----------UGCCCGAcCUUgaCGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 63081 | 0.7 | 0.474829 |
Target: 5'- aCAGCgGCGGGUacgccuccUGGAAgaGCGCGCa-- -3' miRNA: 3'- -GUCG-UGCCCG--------ACCUUgaCGCGCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 126308 | 0.69 | 0.484272 |
Target: 5'- aCAGCACGGGgUGGAACagGCaG-GUGAAc -3' miRNA: 3'- -GUCGUGCCCgACCUUGa-CG-CgCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 62832 | 0.69 | 0.503421 |
Target: 5'- gGGCACcGGCggGGGACUgGCGCGCc-- -3' miRNA: 3'- gUCGUGcCCGa-CCUUGA-CGCGCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 34459 | 0.69 | 0.493804 |
Target: 5'- gGGCACGGGCcgGGGGCcccguaccUGCG-GCGGGu -3' miRNA: 3'- gUCGUGCCCGa-CCUUG--------ACGCgCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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