Results 61 - 80 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 97627 | 0.68 | 0.592979 |
Target: 5'- gGGCggaGCGGGC-GGAGC-GgGCGCGGGu -3' miRNA: 3'- gUCG---UGCCCGaCCUUGaCgCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 16176 | 0.68 | 0.542647 |
Target: 5'- gGGCGCGGGCguggcGGGGgUGgGCGgGGg -3' miRNA: 3'- gUCGUGCCCGa----CCUUgACgCGCgCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 32073 | 0.68 | 0.571705 |
Target: 5'- gAGCGCGGcGCUGGGGCU-CGgggagccggacuuCGCGGAg -3' miRNA: 3'- gUCGUGCC-CGACCUUGAcGC-------------GCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 131901 | 0.68 | 0.571705 |
Target: 5'- aCGGCGCGcacccGCUGGAcggGCUuuuuggcGCGCGCGGGa -3' miRNA: 3'- -GUCGUGCc----CGACCU---UGA-------CGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 113306 | 0.68 | 0.582829 |
Target: 5'- -uGcCGCGGGcCUGGGcccgGCUGCGCGaGAAg -3' miRNA: 3'- guC-GUGCCC-GACCU----UGACGCGCgCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 133228 | 0.68 | 0.586885 |
Target: 5'- gAGCugGGGCccuacauggcGGAGCacuacccgcaggcgGCGCGCGAGu -3' miRNA: 3'- gUCGugCCCGa---------CCUUGa-------------CGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 80067 | 0.68 | 0.582829 |
Target: 5'- gGGCGCgggGGGCguggGGGACgcggaccgGCGCGCGc- -3' miRNA: 3'- gUCGUG---CCCGa---CCUUGa-------CGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 44293 | 0.68 | 0.592979 |
Target: 5'- cCAGCgGCGGGCcaGGGccGCUGCcCGCGGg -3' miRNA: 3'- -GUCG-UGCCCGa-CCU--UGACGcGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 74046 | 0.68 | 0.592979 |
Target: 5'- cCAGCGCgccgggGGGCUGcGGcaGCUGCGCGaCGc- -3' miRNA: 3'- -GUCGUG------CCCGAC-CU--UGACGCGC-GCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 1918 | 0.68 | 0.582829 |
Target: 5'- cCAGCGCGcGGCgc--ACUGCGcCGCGGg -3' miRNA: 3'- -GUCGUGC-CCGaccuUGACGC-GCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 71485 | 0.68 | 0.572714 |
Target: 5'- cCGGUGCGcGGC-GGccAGgUGCGCGCGAAa -3' miRNA: 3'- -GUCGUGC-CCGaCC--UUgACGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 97441 | 0.68 | 0.592979 |
Target: 5'- gGGCGCGGGuCUGGGcuucgGCgGCGC-CGGGa -3' miRNA: 3'- gUCGUGCCC-GACCU-----UGaCGCGcGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 122034 | 0.67 | 0.654221 |
Target: 5'- -uGCGCGaaGC-GGcACUGCGCGCGGAu -3' miRNA: 3'- guCGUGCc-CGaCCuUGACGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 120661 | 0.67 | 0.654221 |
Target: 5'- aGGCGCGGGCgcgccUGuGAuCUcGCGCGCGc- -3' miRNA: 3'- gUCGUGCCCG-----AC-CUuGA-CGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 136600 | 0.67 | 0.654221 |
Target: 5'- cCGGCGCa-GCgUGGAGCgGCGCGCGc- -3' miRNA: 3'- -GUCGUGccCG-ACCUUGaCGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 111610 | 0.67 | 0.654221 |
Target: 5'- gGGCGC-GGCUGG-GCUGCgGCGCc-- -3' miRNA: 3'- gUCGUGcCCGACCuUGACG-CGCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 81767 | 0.67 | 0.654221 |
Target: 5'- aCGGCGCGGGCcaGGACgaGCuCGCGGAu -3' miRNA: 3'- -GUCGUGCCCGacCUUGa-CGcGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 43115 | 0.67 | 0.621528 |
Target: 5'- uGGCGCGGGaUUGGcGCgccuacacacgcGCGCGCGGc -3' miRNA: 3'- gUCGUGCCC-GACCuUGa-----------CGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 102959 | 0.67 | 0.612337 |
Target: 5'- gCGGcCGCGGGCgccgcGGGcuccgccGCcGCGCGCGAc -3' miRNA: 3'- -GUC-GUGCCCGa----CCU-------UGaCGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 59401 | 0.67 | 0.603157 |
Target: 5'- gAGCcCGGGCUcgccggcgccGGcGCUGuCGCGCGGc -3' miRNA: 3'- gUCGuGCCCGA----------CCuUGAC-GCGCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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