miRNA display CGI


Results 81 - 100 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 14456 0.67 0.623572
Target:  5'- gGGCGCGcGGC-GGAGCU-CGCGCu-- -3'
miRNA:   3'- gUCGUGC-CCGaCCUUGAcGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 136600 0.67 0.654221
Target:  5'- cCGGCGCa-GCgUGGAGCgGCGCGCGc- -3'
miRNA:   3'- -GUCGUGccCG-ACCUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 71963 0.67 0.654221
Target:  5'- uCGGCGCgGGGCgcGGA---GCGCGCGGc -3'
miRNA:   3'- -GUCGUG-CCCGa-CCUugaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 12307 0.67 0.644011
Target:  5'- gGGCACGGGCgcguagccGGCggGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCGacc-----UUGa-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 69760 0.67 0.640946
Target:  5'- gAGCGCgggGGGCggcgccgGGGACUgagccgcucccgcgGCGCGCGGc -3'
miRNA:   3'- gUCGUG---CCCGa------CCUUGA--------------CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 113343 0.67 0.644011
Target:  5'- gCGGCACGGGCUGu-ACaaCGCGCa-- -3'
miRNA:   3'- -GUCGUGCCCGACcuUGacGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 127214 0.67 0.644011
Target:  5'- gCGGCGCGcGGCUuaAGCcGCGCGCGu- -3'
miRNA:   3'- -GUCGUGC-CCGAccUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 74708 0.67 0.603157
Target:  5'- -cGCGCGGGCgcGGAACcggGC-CGCGGc -3'
miRNA:   3'- guCGUGCCCGa-CCUUGa--CGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 102959 0.67 0.612337
Target:  5'- gCGGcCGCGGGCgccgcGGGcuccgccGCcGCGCGCGAc -3'
miRNA:   3'- -GUC-GUGCCCGa----CCU-------UGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 43115 0.67 0.621528
Target:  5'- uGGCGCGGGaUUGGcGCgccuacacacgcGCGCGCGGc -3'
miRNA:   3'- gUCGUGCCC-GACCuUGa-----------CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 15940 0.67 0.623572
Target:  5'- gGGCcCGGGCaGGAGCcGgGgGCGAGu -3'
miRNA:   3'- gUCGuGCCCGaCCUUGaCgCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 48204 0.67 0.644011
Target:  5'- gGGCGCGGGCcGGcGCgcguuucagaGCGCGCa-- -3'
miRNA:   3'- gUCGUGCCCGaCCuUGa---------CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 88168 0.67 0.644011
Target:  5'- gCAGC-CGGGCcGGGGCgacgccggcgGCGCcgGCGAGg -3'
miRNA:   3'- -GUCGuGCCCGaCCUUGa---------CGCG--CGCUU- -5'
23609 3' -59.7 NC_005261.1 + 128748 0.67 0.633792
Target:  5'- uCGGCAucgucgacuCGGGCUaccagGGAaaACUGCGCGCc-- -3'
miRNA:   3'- -GUCGU---------GCCCGA-----CCU--UGACGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 19061 0.67 0.633792
Target:  5'- gGGUACGGGCUGcGcGGCUcucgGCGCGUGc- -3'
miRNA:   3'- gUCGUGCCCGAC-C-UUGA----CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 112664 0.67 0.623572
Target:  5'- gAGUACGagcGGCUGGAgcgcgagggGCUGgGCGuCGAGg -3'
miRNA:   3'- gUCGUGC---CCGACCU---------UGACgCGC-GCUU- -5'
23609 3' -59.7 NC_005261.1 + 105908 0.67 0.623572
Target:  5'- gGGCGCGGGCc---GCUcGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCGaccuUGA-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 76555 0.66 0.67458
Target:  5'- aCGGCAUGGGCgacgaggGcGAGCUcguccucaCGCGCGAGc -3'
miRNA:   3'- -GUCGUGCCCGa------C-CUUGAc-------GCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 104015 0.66 0.684712
Target:  5'- uGGCGCGcGcGCUGu-ACUGCGCGCc-- -3'
miRNA:   3'- gUCGUGC-C-CGACcuUGACGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 30125 0.66 0.704836
Target:  5'- uGGCGCGGcccgcgacgcGgUGGAGC-GCGCGCGc- -3'
miRNA:   3'- gUCGUGCC----------CgACCUUGaCGCGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.