miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 34459 0.69 0.493804
Target:  5'- gGGCACGGGCcgGGGGCcccguaccUGCG-GCGGGu -3'
miRNA:   3'- gUCGUGCCCGa-CCUUG--------ACGCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 17549 0.69 0.500528
Target:  5'- gCGGCGCGGGCccgccguucggcggUGGccUUGCGgGCGAGc -3'
miRNA:   3'- -GUCGUGCCCG--------------ACCuuGACGCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 62832 0.69 0.503421
Target:  5'- gGGCACcGGCggGGGACUgGCGCGCc-- -3'
miRNA:   3'- gUCGUGcCCGa-CCUUGA-CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 64498 0.69 0.503421
Target:  5'- uGGCGCGGGUgcucGGGGCccGCGgGCGGc -3'
miRNA:   3'- gUCGUGCCCGa---CCUUGa-CGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 74918 0.69 0.504388
Target:  5'- -cGCGCGGGggagggcgaggacgGGGACUGCGgCGCGGg -3'
miRNA:   3'- guCGUGCCCga------------CCUUGACGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 105122 0.69 0.513119
Target:  5'- -cGCGCGGGCgcGGGccGCcgGCGCGCGc- -3'
miRNA:   3'- guCGUGCCCGa-CCU--UGa-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 9148 0.69 0.513119
Target:  5'- aGGCAaauCGGGCUGGGACcugGCGcCGCc-- -3'
miRNA:   3'- gUCGU---GCCCGACCUUGa--CGC-GCGcuu -5'
23609 3' -59.7 NC_005261.1 + 39891 0.69 0.522893
Target:  5'- -cGCGCGcGGCUGuGcAGCUggcGCGCGCGGc -3'
miRNA:   3'- guCGUGC-CCGAC-C-UUGA---CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 75825 0.69 0.522893
Target:  5'- cCGGCGCGGccGCgcccggGGAGggGCGCGCGGc -3'
miRNA:   3'- -GUCGUGCC--CGa-----CCUUgaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 23506 0.69 0.522893
Target:  5'- aGGCGCGGGCccugGGAGCacgcgGuCGgGCGAGc -3'
miRNA:   3'- gUCGUGCCCGa---CCUUGa----C-GCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 135659 0.69 0.528791
Target:  5'- gGGCGCGGGCggcccucgcucgaGGAGCUcugcGCcGCGCGGc -3'
miRNA:   3'- gUCGUGCCCGa------------CCUUGA----CG-CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 133362 0.69 0.532737
Target:  5'- -cGCGCaGGGCUucGGcugcCUGCGCGCGGc -3'
miRNA:   3'- guCGUG-CCCGA--CCuu--GACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 107263 0.69 0.532737
Target:  5'- -cGCGCGGGCacGGGCggGCGCGCa-- -3'
miRNA:   3'- guCGUGCCCGacCUUGa-CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 13029 0.69 0.532737
Target:  5'- cCAGCACcacgagccaGGGCgcGGGGCcGCGCGCGc- -3'
miRNA:   3'- -GUCGUG---------CCCGa-CCUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 125371 0.69 0.532737
Target:  5'- gGGCAgaggGGcGCUGGAACgggUGCGUGCGGu -3'
miRNA:   3'- gUCGUg---CC-CGACCUUG---ACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 1725 0.69 0.532737
Target:  5'- gCGGCACGGGCacc-GCgGUGCGCGGg -3'
miRNA:   3'- -GUCGUGCCCGaccuUGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 38172 0.69 0.532737
Target:  5'- gCAGCACGGcugcCUGGAGgcCUGgGCGCGc- -3'
miRNA:   3'- -GUCGUGCCc---GACCUU--GACgCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 27243 0.68 0.542647
Target:  5'- aGGCGCcuGGGgUGGGGCgggGUGUGCGGg -3'
miRNA:   3'- gUCGUG--CCCgACCUUGa--CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 5122 0.68 0.542647
Target:  5'- uCGGCGCGGGCggcccgccGGcGCUcGCGCGCc-- -3'
miRNA:   3'- -GUCGUGCCCGa-------CCuUGA-CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 16176 0.68 0.542647
Target:  5'- gGGCGCGGGCguggcGGGGgUGgGCGgGGg -3'
miRNA:   3'- gUCGUGCCCGa----CCUUgACgCGCgCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.