miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 44738 0.76 0.200736
Target:  5'- gCAGC-UGGGCcccGAGCUGCGCGCGAc -3'
miRNA:   3'- -GUCGuGCCCGac-CUUGACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 44942 0.66 0.663396
Target:  5'- gAGUuCGGcGCUGGAgagccuGCUgcgggacGCGCGCGAGg -3'
miRNA:   3'- gUCGuGCC-CGACCU------UGA-------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 45990 0.75 0.221513
Target:  5'- gCAGCACGGGCgccAugUGUGCGCGGc -3'
miRNA:   3'- -GUCGUGCCCGaccUugACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 48029 0.69 0.484272
Target:  5'- gAGCA-GGGCgaGGAGCacgcGCGCGCGGu -3'
miRNA:   3'- gUCGUgCCCGa-CCUUGa---CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 48204 0.67 0.644011
Target:  5'- gGGCGCGGGCcGGcGCgcguuucagaGCGCGCa-- -3'
miRNA:   3'- gUCGUGCCCGaCCuUGa---------CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 48253 0.66 0.684712
Target:  5'- gCAGCGCGgggccaaugcaaGGCgGGGAC-GCGCGCa-- -3'
miRNA:   3'- -GUCGUGC------------CCGaCCUUGaCGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 48324 0.73 0.301863
Target:  5'- gGGCcCGGGCUcgGGGGC-GCGCGCGGc -3'
miRNA:   3'- gUCGuGCCCGA--CCUUGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 49124 0.66 0.704836
Target:  5'- gAGCgcgGCGGGC-GGGACccccGCGCGCa-- -3'
miRNA:   3'- gUCG---UGCCCGaCCUUGa---CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 49567 0.71 0.411513
Target:  5'- gCAGCAUGGGCgugaacacgGGcuCgggGCGCGCGGc -3'
miRNA:   3'- -GUCGUGCCCGa--------CCuuGa--CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 51524 0.75 0.232573
Target:  5'- gGGCGcCGGGCUGGGGCUGUcgcuaGCGCa-- -3'
miRNA:   3'- gUCGU-GCCCGACCUUGACG-----CGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 59057 0.66 0.67458
Target:  5'- uCAGCGCGcgcGGCcgcGGAGagcGCGCGCGGGu -3'
miRNA:   3'- -GUCGUGC---CCGa--CCUUga-CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 59401 0.67 0.603157
Target:  5'- gAGCcCGGGCUcgccggcgccGGcGCUGuCGCGCGGc -3'
miRNA:   3'- gUCGuGCCCGA----------CCuUGAC-GCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 59550 0.66 0.663396
Target:  5'- -cGCGCGGGCUucuaaucGGcGC-GCGCGCGc- -3'
miRNA:   3'- guCGUGCCCGA-------CCuUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 59724 0.66 0.704836
Target:  5'- -cGC-CGGGC-GGcAGCggcgGCGCGCGGc -3'
miRNA:   3'- guCGuGCCCGaCC-UUGa---CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 62832 0.69 0.503421
Target:  5'- gGGCACcGGCggGGGACUgGCGCGCc-- -3'
miRNA:   3'- gUCGUGcCCGa-CCUUGA-CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 63081 0.7 0.474829
Target:  5'- aCAGCgGCGGGUacgccuccUGGAAgaGCGCGCa-- -3'
miRNA:   3'- -GUCG-UGCCCG--------ACCUUgaCGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 64112 0.72 0.369619
Target:  5'- gCGGCACGGGC-GGcACgUGCcGCGCGGc -3'
miRNA:   3'- -GUCGUGCCCGaCCuUG-ACG-CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 64498 0.69 0.503421
Target:  5'- uGGCGCGGGUgcucGGGGCccGCGgGCGGc -3'
miRNA:   3'- gUCGUGCCCGa---CCUUGa-CGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 66752 0.73 0.288171
Target:  5'- -uGCACGGGCUGGuccaccggguguGGCccgucGCGCGCGAu -3'
miRNA:   3'- guCGUGCCCGACC------------UUGa----CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 68109 0.8 0.100414
Target:  5'- aAGUuCGGGCUGGAGCUGCGCGgGc- -3'
miRNA:   3'- gUCGuGCCCGACCUUGACGCGCgCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.