miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 69510 0.75 0.221513
Target:  5'- cCGGCgGCGGGCUgccGGAGCUG-GCGCGGg -3'
miRNA:   3'- -GUCG-UGCCCGA---CCUUGACgCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 69760 0.67 0.640946
Target:  5'- gAGCGCgggGGGCggcgccgGGGACUgagccgcucccgcgGCGCGCGGc -3'
miRNA:   3'- gUCGUG---CCCGa------CCUUGA--------------CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 71485 0.68 0.572714
Target:  5'- cCGGUGCGcGGC-GGccAGgUGCGCGCGAAa -3'
miRNA:   3'- -GUCGUGC-CCGaCC--UUgACGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 71963 0.67 0.654221
Target:  5'- uCGGCGCgGGGCgcGGA---GCGCGCGGc -3'
miRNA:   3'- -GUCGUG-CCCGa-CCUugaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 72480 0.66 0.664413
Target:  5'- gAGCGCGGccaGCgccaGGAGC-GcCGCGCGAAg -3'
miRNA:   3'- gUCGUGCC---CGa---CCUUGaC-GCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 73776 0.66 0.664413
Target:  5'- aGGCGCuGGcCUGcGACgUGCGCGCGGc -3'
miRNA:   3'- gUCGUGcCC-GACcUUG-ACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 74046 0.68 0.592979
Target:  5'- cCAGCGCgccgggGGGCUGcGGcaGCUGCGCGaCGc- -3'
miRNA:   3'- -GUCGUG------CCCGAC-CU--UGACGCGC-GCuu -5'
23609 3' -59.7 NC_005261.1 + 74708 0.67 0.603157
Target:  5'- -cGCGCGGGCgcGGAACcggGC-CGCGGc -3'
miRNA:   3'- guCGUGCCCGa-CCUUGa--CGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 74918 0.69 0.504388
Target:  5'- -cGCGCGGGggagggcgaggacgGGGACUGCGgCGCGGg -3'
miRNA:   3'- guCGUGCCCga------------CCUUGACGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 75825 0.69 0.522893
Target:  5'- cCGGCGCGGccGCgcccggGGAGggGCGCGCGGc -3'
miRNA:   3'- -GUCGUGCC--CGa-----CCUUgaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 76555 0.66 0.67458
Target:  5'- aCGGCAUGGGCgacgaggGcGAGCUcguccucaCGCGCGAGc -3'
miRNA:   3'- -GUCGUGCCCGa------C-CUUGAc-------GCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 80067 0.68 0.582829
Target:  5'- gGGCGCgggGGGCguggGGGACgcggaccgGCGCGCGc- -3'
miRNA:   3'- gUCGUG---CCCGa---CCUUGa-------CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 81767 0.67 0.654221
Target:  5'- aCGGCGCGGGCcaGGACgaGCuCGCGGAu -3'
miRNA:   3'- -GUCGUGCCCGacCUUGa-CGcGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 81968 0.66 0.684712
Target:  5'- aCAGCGCGGuGUUcGGcGGCUGCGCGa--- -3'
miRNA:   3'- -GUCGUGCC-CGA-CC-UUGACGCGCgcuu -5'
23609 3' -59.7 NC_005261.1 + 82949 0.66 0.6948
Target:  5'- cCAGCGCGGcGCcGGGcggaagacguGgUGCGCGuCGAGc -3'
miRNA:   3'- -GUCGUGCC-CGaCCU----------UgACGCGC-GCUU- -5'
23609 3' -59.7 NC_005261.1 + 85666 1.05 0.001684
Target:  5'- gCAGCACGGGCUGGAACUGCGCGCGAAa -3'
miRNA:   3'- -GUCGUGCCCGACCUUGACGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 88168 0.67 0.644011
Target:  5'- gCAGC-CGGGCcGGGGCgacgccggcgGCGCcgGCGAGg -3'
miRNA:   3'- -GUCGuGCCCGaCCUUGa---------CGCG--CGCUU- -5'
23609 3' -59.7 NC_005261.1 + 89109 0.71 0.4029
Target:  5'- uGGCGCGcGCgUGGcACUGCGCGCGc- -3'
miRNA:   3'- gUCGUGCcCG-ACCuUGACGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 90203 0.66 0.704836
Target:  5'- gAGCGCggGGGCggcGGAGCgcccuCGCGCGGc -3'
miRNA:   3'- gUCGUG--CCCGa--CCUUGac---GCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 92134 0.7 0.44707
Target:  5'- aUAGCuCGGGCUGGGccaggaccucgGCgaGCGCGCGc- -3'
miRNA:   3'- -GUCGuGCCCGACCU-----------UGa-CGCGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.