miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 120422 0.66 0.664413
Target:  5'- gCGGCcUGGGCUGGugAACaUGCGCgGCGu- -3'
miRNA:   3'- -GUCGuGCCCGACC--UUG-ACGCG-CGCuu -5'
23609 3' -59.7 NC_005261.1 + 118365 0.66 0.704836
Target:  5'- uCGGC-CGGGCgcUGGg---GCGCGCGGc -3'
miRNA:   3'- -GUCGuGCCCG--ACCuugaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 116478 0.82 0.079104
Target:  5'- cCGGCGCGGGC-GGGGCggGCGCGCGGu -3'
miRNA:   3'- -GUCGUGCCCGaCCUUGa-CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 113343 0.67 0.644011
Target:  5'- gCGGCACGGGCUGu-ACaaCGCGCa-- -3'
miRNA:   3'- -GUCGUGCCCGACcuUGacGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 113306 0.68 0.582829
Target:  5'- -uGcCGCGGGcCUGGGcccgGCUGCGCGaGAAg -3'
miRNA:   3'- guC-GUGCCC-GACCU----UGACGCGCgCUU- -5'
23609 3' -59.7 NC_005261.1 + 112664 0.67 0.623572
Target:  5'- gAGUACGagcGGCUGGAgcgcgagggGCUGgGCGuCGAGg -3'
miRNA:   3'- gUCGUGC---CCGACCU---------UGACgCGC-GCUU- -5'
23609 3' -59.7 NC_005261.1 + 111610 0.67 0.654221
Target:  5'- gGGCGC-GGCUGG-GCUGCgGCGCc-- -3'
miRNA:   3'- gUCGUGcCCGACCuUGACG-CGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 110245 0.71 0.420238
Target:  5'- gCGGCGCGGcGCccggGGGGCUGCGgGCc-- -3'
miRNA:   3'- -GUCGUGCC-CGa---CCUUGACGCgCGcuu -5'
23609 3' -59.7 NC_005261.1 + 107263 0.69 0.532737
Target:  5'- -cGCGCGGGCacGGGCggGCGCGCa-- -3'
miRNA:   3'- guCGUGCCCGacCUUGa-CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 105908 0.67 0.623572
Target:  5'- gGGCGCGGGCc---GCUcGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCGaccuUGA-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 105283 0.66 0.664413
Target:  5'- gCAGCGCcGGC--GAGCccggGCGCGCGAGc -3'
miRNA:   3'- -GUCGUGcCCGacCUUGa---CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 105122 0.69 0.513119
Target:  5'- -cGCGCGGGCgcGGGccGCcgGCGCGCGc- -3'
miRNA:   3'- guCGUGCCCGa-CCU--UGa-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 104015 0.66 0.684712
Target:  5'- uGGCGCGcGcGCUGu-ACUGCGCGCc-- -3'
miRNA:   3'- gUCGUGC-C-CGACcuUGACGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 102959 0.67 0.612337
Target:  5'- gCGGcCGCGGGCgccgcGGGcuccgccGCcGCGCGCGAc -3'
miRNA:   3'- -GUC-GUGCCCGa----CCU-------UGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 100661 0.66 0.684712
Target:  5'- aCGGCGCGcgucGC-GGggUUcGCGCGCGAGu -3'
miRNA:   3'- -GUCGUGCc---CGaCCuuGA-CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 98352 0.66 0.664413
Target:  5'- -cGCGgGGGC-GGGGgUGgGCGCGGg -3'
miRNA:   3'- guCGUgCCCGaCCUUgACgCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 98050 0.7 0.429075
Target:  5'- gCGGcCGCGGGCggcGGGACcGCGgGCGGc -3'
miRNA:   3'- -GUC-GUGCCCGa--CCUUGaCGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 97744 0.66 0.67458
Target:  5'- uGGCAgGGGC-GGGGCgggcucgGCGgCGCGGc -3'
miRNA:   3'- gUCGUgCCCGaCCUUGa------CGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 97627 0.68 0.592979
Target:  5'- gGGCggaGCGGGC-GGAGC-GgGCGCGGGu -3'
miRNA:   3'- gUCG---UGCCCGaCCUUGaCgCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 97585 0.74 0.268554
Target:  5'- uGGCGCGGGC-GGAGCgggcggaGCGgGCGGAg -3'
miRNA:   3'- gUCGUGCCCGaCCUUGa------CGCgCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.