miRNA display CGI


Results 101 - 120 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 44293 0.68 0.592979
Target:  5'- cCAGCgGCGGGCcaGGGccGCUGCcCGCGGg -3'
miRNA:   3'- -GUCG-UGCCCGa-CCU--UGACGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 133228 0.68 0.586885
Target:  5'- gAGCugGGGCccuacauggcGGAGCacuacccgcaggcgGCGCGCGAGu -3'
miRNA:   3'- gUCGugCCCGa---------CCUUGa-------------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 113306 0.68 0.582829
Target:  5'- -uGcCGCGGGcCUGGGcccgGCUGCGCGaGAAg -3'
miRNA:   3'- guC-GUGCCC-GACCU----UGACGCGCgCUU- -5'
23609 3' -59.7 NC_005261.1 + 80067 0.68 0.582829
Target:  5'- gGGCGCgggGGGCguggGGGACgcggaccgGCGCGCGc- -3'
miRNA:   3'- gUCGUG---CCCGa---CCUUGa-------CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 1918 0.68 0.582829
Target:  5'- cCAGCGCGcGGCgc--ACUGCGcCGCGGg -3'
miRNA:   3'- -GUCGUGC-CCGaccuUGACGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 14456 0.67 0.623572
Target:  5'- gGGCGCGcGGC-GGAGCU-CGCGCu-- -3'
miRNA:   3'- gUCGUGC-CCGaCCUUGAcGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 105908 0.67 0.623572
Target:  5'- gGGCGCGGGCc---GCUcGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCGaccuUGA-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 71963 0.67 0.654221
Target:  5'- uCGGCGCgGGGCgcGGA---GCGCGCGGc -3'
miRNA:   3'- -GUCGUG-CCCGa-CCUugaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 21808 0.67 0.654221
Target:  5'- cCGGC-CGGGCcGGGcccGCggcggGCGCGCGu- -3'
miRNA:   3'- -GUCGuGCCCGaCCU---UGa----CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 43354 0.67 0.654221
Target:  5'- -uGcCugGGGCUGGugccGCUGCG-GCGGc -3'
miRNA:   3'- guC-GugCCCGACCu---UGACGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 29924 0.67 0.654221
Target:  5'- -uGCGCGaGCUGGcggacGCUGCGCuGCGGc -3'
miRNA:   3'- guCGUGCcCGACCu----UGACGCG-CGCUu -5'
23609 3' -59.7 NC_005261.1 + 48204 0.67 0.644011
Target:  5'- gGGCGCGGGCcGGcGCgcguuucagaGCGCGCa-- -3'
miRNA:   3'- gUCGUGCCCGaCCuUGa---------CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 127214 0.67 0.644011
Target:  5'- gCGGCGCGcGGCUuaAGCcGCGCGCGu- -3'
miRNA:   3'- -GUCGUGC-CCGAccUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 113343 0.67 0.644011
Target:  5'- gCGGCACGGGCUGu-ACaaCGCGCa-- -3'
miRNA:   3'- -GUCGUGCCCGACcuUGacGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 88168 0.67 0.644011
Target:  5'- gCAGC-CGGGCcGGGGCgacgccggcgGCGCcgGCGAGg -3'
miRNA:   3'- -GUCGuGCCCGaCCUUGa---------CGCG--CGCUU- -5'
23609 3' -59.7 NC_005261.1 + 12307 0.67 0.644011
Target:  5'- gGGCACGGGCgcguagccGGCggGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCGacc-----UUGa-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 69760 0.67 0.640946
Target:  5'- gAGCGCgggGGGCggcgccgGGGACUgagccgcucccgcgGCGCGCGGc -3'
miRNA:   3'- gUCGUG---CCCGa------CCUUGA--------------CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 128748 0.67 0.633792
Target:  5'- uCGGCAucgucgacuCGGGCUaccagGGAaaACUGCGCGCc-- -3'
miRNA:   3'- -GUCGU---------GCCCGA-----CCU--UGACGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 19061 0.67 0.633792
Target:  5'- gGGUACGGGCUGcGcGGCUcucgGCGCGUGc- -3'
miRNA:   3'- gUCGUGCCCGAC-C-UUGA----CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 112664 0.67 0.623572
Target:  5'- gAGUACGagcGGCUGGAgcgcgagggGCUGgGCGuCGAGg -3'
miRNA:   3'- gUCGUGC---CCGACCU---------UGACgCGC-GCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.