Results 41 - 60 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 43794 | 0.66 | 0.704836 |
Target: 5'- gGGCgccGCGGGUgagGGGGCgccggGCGCGCc-- -3' miRNA: 3'- gUCG---UGCCCGa--CCUUGa----CGCGCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 49124 | 0.66 | 0.704836 |
Target: 5'- gAGCgcgGCGGGC-GGGACccccGCGCGCa-- -3' miRNA: 3'- gUCG---UGCCCGaCCUUGa---CGCGCGcuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 90203 | 0.66 | 0.704836 |
Target: 5'- gAGCGCggGGGCggcGGAGCgcccuCGCGCGGc -3' miRNA: 3'- gUCGUG--CCCGa--CCUUGac---GCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 118365 | 0.66 | 0.704836 |
Target: 5'- uCGGC-CGGGCgcUGGg---GCGCGCGGc -3' miRNA: 3'- -GUCGuGCCCG--ACCuugaCGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 127641 | 0.66 | 0.704836 |
Target: 5'- aCGGCgGCGGcGCcGGGGg-GCGCGCGGGu -3' miRNA: 3'- -GUCG-UGCC-CGaCCUUgaCGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 76555 | 0.66 | 0.67458 |
Target: 5'- aCGGCAUGGGCgacgaggGcGAGCUcguccucaCGCGCGAGc -3' miRNA: 3'- -GUCGUGCCCGa------C-CUUGAc-------GCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 44246 | 0.66 | 0.67458 |
Target: 5'- cCAGCGCGcGGCc-GAcgccGCgGCGCGCGGGg -3' miRNA: 3'- -GUCGUGC-CCGacCU----UGaCGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 136600 | 0.67 | 0.654221 |
Target: 5'- cCGGCGCa-GCgUGGAGCgGCGCGCGc- -3' miRNA: 3'- -GUCGUGccCG-ACCUUGaCGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 120661 | 0.67 | 0.654221 |
Target: 5'- aGGCGCGGGCgcgccUGuGAuCUcGCGCGCGc- -3' miRNA: 3'- gUCGUGCCCG-----AC-CUuGA-CGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 122034 | 0.67 | 0.654221 |
Target: 5'- -uGCGCGaaGC-GGcACUGCGCGCGGAu -3' miRNA: 3'- guCGUGCc-CGaCCuUGACGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 44942 | 0.66 | 0.663396 |
Target: 5'- gAGUuCGGcGCUGGAgagccuGCUgcgggacGCGCGCGAGg -3' miRNA: 3'- gUCGuGCC-CGACCU------UGA-------CGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 59550 | 0.66 | 0.663396 |
Target: 5'- -cGCGCGGGCUucuaaucGGcGC-GCGCGCGc- -3' miRNA: 3'- guCGUGCCCGA-------CCuUGaCGCGCGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 72480 | 0.66 | 0.664413 |
Target: 5'- gAGCGCGGccaGCgccaGGAGC-GcCGCGCGAAg -3' miRNA: 3'- gUCGUGCC---CGa---CCUUGaC-GCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 73776 | 0.66 | 0.664413 |
Target: 5'- aGGCGCuGGcCUGcGACgUGCGCGCGGc -3' miRNA: 3'- gUCGUGcCC-GACcUUG-ACGCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 98352 | 0.66 | 0.664413 |
Target: 5'- -cGCGgGGGC-GGGGgUGgGCGCGGg -3' miRNA: 3'- guCGUgCCCGaCCUUgACgCGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 105283 | 0.66 | 0.664413 |
Target: 5'- gCAGCGCcGGC--GAGCccggGCGCGCGAGc -3' miRNA: 3'- -GUCGUGcCCGacCUUGa---CGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 120422 | 0.66 | 0.664413 |
Target: 5'- gCGGCcUGGGCUGGugAACaUGCGCgGCGu- -3' miRNA: 3'- -GUCGuGCCCGACC--UUG-ACGCG-CGCuu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 131953 | 0.66 | 0.664413 |
Target: 5'- -cGCGCccgucuaccGGG-UGGAGCUGCcGCGCGGc -3' miRNA: 3'- guCGUG---------CCCgACCUUGACG-CGCGCUu -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 59057 | 0.66 | 0.67458 |
Target: 5'- uCAGCGCGcgcGGCcgcGGAGagcGCGCGCGGGu -3' miRNA: 3'- -GUCGUGC---CCGa--CCUUga-CGCGCGCUU- -5' |
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23609 | 3' | -59.7 | NC_005261.1 | + | 97744 | 0.66 | 0.67458 |
Target: 5'- uGGCAgGGGC-GGGGCgggcucgGCGgCGCGGc -3' miRNA: 3'- gUCGUgCCCGaCCUUGa------CGC-GCGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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