miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 98352 0.66 0.664413
Target:  5'- -cGCGgGGGC-GGGGgUGgGCGCGGg -3'
miRNA:   3'- guCGUgCCCGaCCUUgACgCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 105283 0.66 0.664413
Target:  5'- gCAGCGCcGGC--GAGCccggGCGCGCGAGc -3'
miRNA:   3'- -GUCGUGcCCGacCUUGa---CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 120422 0.66 0.664413
Target:  5'- gCGGCcUGGGCUGGugAACaUGCGCgGCGu- -3'
miRNA:   3'- -GUCGuGCCCGACC--UUG-ACGCG-CGCuu -5'
23609 3' -59.7 NC_005261.1 + 131953 0.66 0.664413
Target:  5'- -cGCGCccgucuaccGGG-UGGAGCUGCcGCGCGGc -3'
miRNA:   3'- guCGUG---------CCCgACCUUGACG-CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 59550 0.66 0.663396
Target:  5'- -cGCGCGGGCUucuaaucGGcGC-GCGCGCGc- -3'
miRNA:   3'- guCGUGCCCGA-------CCuUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 44942 0.66 0.663396
Target:  5'- gAGUuCGGcGCUGGAgagccuGCUgcgggacGCGCGCGAGg -3'
miRNA:   3'- gUCGuGCC-CGACCU------UGA-------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 29924 0.67 0.654221
Target:  5'- -uGCGCGaGCUGGcggacGCUGCGCuGCGGc -3'
miRNA:   3'- guCGUGCcCGACCu----UGACGCG-CGCUu -5'
23609 3' -59.7 NC_005261.1 + 43354 0.67 0.654221
Target:  5'- -uGcCugGGGCUGGugccGCUGCG-GCGGc -3'
miRNA:   3'- guC-GugCCCGACCu---UGACGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 21808 0.67 0.654221
Target:  5'- cCGGC-CGGGCcGGGcccGCggcggGCGCGCGu- -3'
miRNA:   3'- -GUCGuGCCCGaCCU---UGa----CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 71963 0.67 0.654221
Target:  5'- uCGGCGCgGGGCgcGGA---GCGCGCGGc -3'
miRNA:   3'- -GUCGUG-CCCGa-CCUugaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 81767 0.67 0.654221
Target:  5'- aCGGCGCGGGCcaGGACgaGCuCGCGGAu -3'
miRNA:   3'- -GUCGUGCCCGacCUUGa-CGcGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 111610 0.67 0.654221
Target:  5'- gGGCGC-GGCUGG-GCUGCgGCGCc-- -3'
miRNA:   3'- gUCGUGcCCGACCuUGACG-CGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 136600 0.67 0.654221
Target:  5'- cCGGCGCa-GCgUGGAGCgGCGCGCGc- -3'
miRNA:   3'- -GUCGUGccCG-ACCUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 120661 0.67 0.654221
Target:  5'- aGGCGCGGGCgcgccUGuGAuCUcGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCG-----AC-CUuGA-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 122034 0.67 0.654221
Target:  5'- -uGCGCGaaGC-GGcACUGCGCGCGGAu -3'
miRNA:   3'- guCGUGCc-CGaCCuUGACGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 12307 0.67 0.644011
Target:  5'- gGGCACGGGCgcguagccGGCggGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCGacc-----UUGa-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 88168 0.67 0.644011
Target:  5'- gCAGC-CGGGCcGGGGCgacgccggcgGCGCcgGCGAGg -3'
miRNA:   3'- -GUCGuGCCCGaCCUUGa---------CGCG--CGCUU- -5'
23609 3' -59.7 NC_005261.1 + 113343 0.67 0.644011
Target:  5'- gCGGCACGGGCUGu-ACaaCGCGCa-- -3'
miRNA:   3'- -GUCGUGCCCGACcuUGacGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 127214 0.67 0.644011
Target:  5'- gCGGCGCGcGGCUuaAGCcGCGCGCGu- -3'
miRNA:   3'- -GUCGUGC-CCGAccUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 48204 0.67 0.644011
Target:  5'- gGGCGCGGGCcGGcGCgcguuucagaGCGCGCa-- -3'
miRNA:   3'- gUCGUGCCCGaCCuUGa---------CGCGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.