miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 5' -54.4 NC_005261.1 + 46742 0.66 0.935847
Target:  5'- gCGUgCACgUGCcgcaGCCCGCcGAAGAa- -3'
miRNA:   3'- -GCAgGUGaACGa---CGGGCGuCUUCUac -5'
23609 5' -54.4 NC_005261.1 + 103820 0.66 0.930699
Target:  5'- cCG-CCGCcaGCaGCUCGCGGAGGAg- -3'
miRNA:   3'- -GCaGGUGaaCGaCGGGCGUCUUCUac -5'
23609 5' -54.4 NC_005261.1 + 97807 0.66 0.91375
Target:  5'- cCGUCCGCcgGCgccCCCGCAGAcGGcgGc -3'
miRNA:   3'- -GCAGGUGaaCGac-GGGCGUCU-UCuaC- -5'
23609 5' -54.4 NC_005261.1 + 60287 0.67 0.901204
Target:  5'- gGUCCGCccccGCgGCCCGCAGGc---- -3'
miRNA:   3'- gCAGGUGaa--CGaCGGGCGUCUucuac -5'
23609 5' -54.4 NC_005261.1 + 84775 0.67 0.894564
Target:  5'- aGgCCGCUccaGUUGCCCGCcuGGAAGAc- -3'
miRNA:   3'- gCaGGUGAa--CGACGGGCG--UCUUCUac -5'
23609 5' -54.4 NC_005261.1 + 49275 0.68 0.873214
Target:  5'- aCGUCCGCgaggaagGCgcagaaGCCCGCGGc-GGUGa -3'
miRNA:   3'- -GCAGGUGaa-----CGa-----CGGGCGUCuuCUAC- -5'
23609 5' -54.4 NC_005261.1 + 603 0.68 0.865637
Target:  5'- uGUUCGCggaggGCgagUGCCCgacGCAGggGAUGu -3'
miRNA:   3'- gCAGGUGaa---CG---ACGGG---CGUCuuCUAC- -5'
23609 5' -54.4 NC_005261.1 + 6230 0.69 0.806816
Target:  5'- gGUCCAggUGC-GCCCGgGGAGGGc- -3'
miRNA:   3'- gCAGGUgaACGaCGGGCgUCUUCUac -5'
23609 5' -54.4 NC_005261.1 + 31779 0.69 0.79768
Target:  5'- gCG-CCGCggUGCUGCCCGCGGcgcaGUGc -3'
miRNA:   3'- -GCaGGUGa-ACGACGGGCGUCuuc-UAC- -5'
23609 5' -54.4 NC_005261.1 + 72732 0.69 0.788387
Target:  5'- cCGUCCGCgcggGCgGCCCGCAu-GGcgGg -3'
miRNA:   3'- -GCAGGUGaa--CGaCGGGCGUcuUCuaC- -5'
23609 5' -54.4 NC_005261.1 + 32736 0.7 0.736901
Target:  5'- cCGUCCGCUcUGCgcgcgGCCCGCcgcucuacgggcucGGAGGGa- -3'
miRNA:   3'- -GCAGGUGA-ACGa----CGGGCG--------------UCUUCUac -5'
23609 5' -54.4 NC_005261.1 + 77887 0.71 0.699277
Target:  5'- gCGUCCGCcgucuccucGCUGCa-GCAGGAGGUGa -3'
miRNA:   3'- -GCAGGUGaa-------CGACGggCGUCUUCUAC- -5'
23609 5' -54.4 NC_005261.1 + 85701 1.08 0.003895
Target:  5'- cCGUCCACUUGCUGCCCGCAGAAGAUGc -3'
miRNA:   3'- -GCAGGUGAACGACGGGCGUCUUCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.