miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23610 3' -55.3 NC_005261.1 + 126879 0.66 0.909651
Target:  5'- ---aUGGccCGCAGcAGCGCAGgGCCc -3'
miRNA:   3'- gaacACCa-GCGUCaUCGCGUCgUGGu -5'
23610 3' -55.3 NC_005261.1 + 132942 0.66 0.909651
Target:  5'- --cGUGGUCcCcg-AGCGCuGCGCCGa -3'
miRNA:   3'- gaaCACCAGcGucaUCGCGuCGUGGU- -5'
23610 3' -55.3 NC_005261.1 + 46503 0.66 0.909651
Target:  5'- ----cGGggCGCAGcccggcgucGCGCAGCACCGc -3'
miRNA:   3'- gaacaCCa-GCGUCau-------CGCGUCGUGGU- -5'
23610 3' -55.3 NC_005261.1 + 56976 0.66 0.909651
Target:  5'- --aGUGGUUcgGCAGcgAGCGCGuGgACCAc -3'
miRNA:   3'- gaaCACCAG--CGUCa-UCGCGU-CgUGGU- -5'
23610 3' -55.3 NC_005261.1 + 374 0.66 0.903345
Target:  5'- --gGUGG-CgGCGGUGGCGgCGGCGgCGg -3'
miRNA:   3'- gaaCACCaG-CGUCAUCGC-GUCGUgGU- -5'
23610 3' -55.3 NC_005261.1 + 40162 0.66 0.903345
Target:  5'- ---cUGcUCGCAGUGGgGCAGgGCCc -3'
miRNA:   3'- gaacACcAGCGUCAUCgCGUCgUGGu -5'
23610 3' -55.3 NC_005261.1 + 138045 0.66 0.903345
Target:  5'- --gGUGG-CgGCGGUGGCGgCGGCGgCGg -3'
miRNA:   3'- gaaCACCaG-CGUCAUCGC-GUCGUgGU- -5'
23610 3' -55.3 NC_005261.1 + 115626 0.66 0.903345
Target:  5'- -----cGUCGCGGcAGCGCAGCGUCGg -3'
miRNA:   3'- gaacacCAGCGUCaUCGCGUCGUGGU- -5'
23610 3' -55.3 NC_005261.1 + 108065 0.66 0.896794
Target:  5'- --gGUGGUCGU-GUAGUGCgcgagguagucGGCGCUg -3'
miRNA:   3'- gaaCACCAGCGuCAUCGCG-----------UCGUGGu -5'
23610 3' -55.3 NC_005261.1 + 78051 0.66 0.888615
Target:  5'- --gGUGGUCGCGGgcccggcccccGCGCcGGC-CCAg -3'
miRNA:   3'- gaaCACCAGCGUCau---------CGCG-UCGuGGU- -5'
23610 3' -55.3 NC_005261.1 + 118810 0.66 0.882973
Target:  5'- --cGUGGgcgucugCGCccugGGCGCGGCACUg -3'
miRNA:   3'- gaaCACCa------GCGuca-UCGCGUCGUGGu -5'
23610 3' -55.3 NC_005261.1 + 97437 0.66 0.875711
Target:  5'- cCUUG-GG-CGCGGgucugGGCuucgGCGGCGCCGg -3'
miRNA:   3'- -GAACaCCaGCGUCa----UCG----CGUCGUGGU- -5'
23610 3' -55.3 NC_005261.1 + 118915 0.66 0.875711
Target:  5'- -cUG-GGUC-CGGcgccgcgGGCGCGGCGCCGc -3'
miRNA:   3'- gaACaCCAGcGUCa------UCGCGUCGUGGU- -5'
23610 3' -55.3 NC_005261.1 + 114063 0.66 0.875711
Target:  5'- --cGUGG-CGCGGcucaGCGGCGCCGa -3'
miRNA:   3'- gaaCACCaGCGUCaucgCGUCGUGGU- -5'
23610 3' -55.3 NC_005261.1 + 79830 0.66 0.875711
Target:  5'- ----cGG-CGCGGcggccAGCGCAGCGCUAg -3'
miRNA:   3'- gaacaCCaGCGUCa----UCGCGUCGUGGU- -5'
23610 3' -55.3 NC_005261.1 + 77444 0.67 0.860508
Target:  5'- ---cUGGUCGuCAGccaggcccggGGCGCGGCugCAg -3'
miRNA:   3'- gaacACCAGC-GUCa---------UCGCGUCGugGU- -5'
23610 3' -55.3 NC_005261.1 + 115475 0.67 0.860508
Target:  5'- -gUGUcGGUCGCGGgcucGGcCGCGGCGgCGc -3'
miRNA:   3'- gaACA-CCAGCGUCa---UC-GCGUCGUgGU- -5'
23610 3' -55.3 NC_005261.1 + 65657 0.67 0.85258
Target:  5'- ---cUGGcgCGCGccGgcGCGCAGCGCCGc -3'
miRNA:   3'- gaacACCa-GCGU--CauCGCGUCGUGGU- -5'
23610 3' -55.3 NC_005261.1 + 82284 0.67 0.85258
Target:  5'- ---cUGGUCGCGGa--UGCAGCGCCc -3'
miRNA:   3'- gaacACCAGCGUCaucGCGUCGUGGu -5'
23610 3' -55.3 NC_005261.1 + 64257 0.67 0.839463
Target:  5'- ---cUGGUacgccaucaucagcaCGCcGUGGUGCAGCGCCGc -3'
miRNA:   3'- gaacACCA---------------GCGuCAUCGCGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.