miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23610 5' -54.2 NC_005261.1 + 49437 0.66 0.943934
Target:  5'- --gGAAACaGCGCgAGCccgcgCGcGCCGCGg -3'
miRNA:   3'- acaUUUUGaCGCGgUCGa----GC-CGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 133017 0.66 0.943934
Target:  5'- -----cGCUGCGCCAcccGCgggCGcGCCACc -3'
miRNA:   3'- acauuuUGACGCGGU---CGa--GC-CGGUGc -5'
23610 5' -54.2 NC_005261.1 + 100222 0.66 0.943934
Target:  5'- --------cGCGUagAGCUCGGCCACc -3'
miRNA:   3'- acauuuugaCGCGg-UCGAGCCGGUGc -5'
23610 5' -54.2 NC_005261.1 + 36272 0.66 0.943934
Target:  5'- aUGUGAAAacaaGUGCgGGCgCGGCCGgGa -3'
miRNA:   3'- -ACAUUUUga--CGCGgUCGaGCCGGUgC- -5'
23610 5' -54.2 NC_005261.1 + 83222 0.66 0.943934
Target:  5'- gGUGc-ACaGCGCCAGUcgcCGGcCCACGg -3'
miRNA:   3'- aCAUuuUGaCGCGGUCGa--GCC-GGUGC- -5'
23610 5' -54.2 NC_005261.1 + 59368 0.66 0.939198
Target:  5'- gGUGucGCc-CGCCAGCgccCGcGCCACGg -3'
miRNA:   3'- aCAUuuUGacGCGGUCGa--GC-CGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 30143 0.66 0.939198
Target:  5'- gGUGGAGCgcgcGCGCCuuAGCggcGCCGCGc -3'
miRNA:   3'- aCAUUUUGa---CGCGG--UCGagcCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 39347 0.66 0.939198
Target:  5'- ---cAAGCUGCGCgCGGCggCaGCCGCc -3'
miRNA:   3'- acauUUUGACGCG-GUCGa-GcCGGUGc -5'
23610 5' -54.2 NC_005261.1 + 83300 0.66 0.939198
Target:  5'- ----cGGCUGCGCggggucgugCAGCUCGggcggcGCCACGc -3'
miRNA:   3'- acauuUUGACGCG---------GUCGAGC------CGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 3661 0.66 0.939198
Target:  5'- -cUGGAGCgcagGCcgcgGCCGGCa-GGCCGCGg -3'
miRNA:   3'- acAUUUUGa---CG----CGGUCGagCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 30031 0.66 0.939198
Target:  5'- ----cGGCUGCagcgggccgcgGCCuGC-CGGCCGCGg -3'
miRNA:   3'- acauuUUGACG-----------CGGuCGaGCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 29882 0.66 0.934213
Target:  5'- -----cGCUGcCGCCAGCgccCGGgcCCGCGg -3'
miRNA:   3'- acauuuUGAC-GCGGUCGa--GCC--GGUGC- -5'
23610 5' -54.2 NC_005261.1 + 47145 0.66 0.934213
Target:  5'- -----cACaGCGCCGGCgUCGGCgGCc -3'
miRNA:   3'- acauuuUGaCGCGGUCG-AGCCGgUGc -5'
23610 5' -54.2 NC_005261.1 + 96327 0.66 0.934213
Target:  5'- ----uGACUG-GCCuGGCgCGGCCGCGc -3'
miRNA:   3'- acauuUUGACgCGG-UCGaGCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 96363 0.66 0.934213
Target:  5'- ----uGACUG-GCCuGGCgCGGCCGCGc -3'
miRNA:   3'- acauuUUGACgCGG-UCGaGCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 127494 0.66 0.934213
Target:  5'- cUGgc-GGCUGCcuGCCgGGCguacucggCGGCCACGa -3'
miRNA:   3'- -ACauuUUGACG--CGG-UCGa-------GCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 48195 0.66 0.934213
Target:  5'- gGgcAAACaggGCGCgGGC-CGGCgCGCGu -3'
miRNA:   3'- aCauUUUGa--CGCGgUCGaGCCG-GUGC- -5'
23610 5' -54.2 NC_005261.1 + 119758 0.66 0.934213
Target:  5'- aUGUGcuguUUGCgGCCcagaacGGCUCGGUCGCGu -3'
miRNA:   3'- -ACAUuuu-GACG-CGG------UCGAGCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 122918 0.66 0.934213
Target:  5'- -uUGGAGCgcaCGCCgAGCagcgCGGCCGCGc -3'
miRNA:   3'- acAUUUUGac-GCGG-UCGa---GCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 22728 0.66 0.934213
Target:  5'- --gAGGACcaGCGCCAG-UCGGgCGCGg -3'
miRNA:   3'- acaUUUUGa-CGCGGUCgAGCCgGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.