miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23610 5' -54.2 NC_005261.1 + 85113 1.09 0.003509
Target:  5'- aUGUAAAACUGCGCCAGCUCGGCCACGu -3'
miRNA:   3'- -ACAUUUUGACGCGGUCGAGCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 102335 0.86 0.108134
Target:  5'- ----cAGCcGCGCCAGCUCGGCCGCGu -3'
miRNA:   3'- acauuUUGaCGCGGUCGAGCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 50449 0.83 0.188134
Target:  5'- cGUGAAGCUGCGCCGGCagGaGaCCACGa -3'
miRNA:   3'- aCAUUUUGACGCGGUCGagC-C-GGUGC- -5'
23610 5' -54.2 NC_005261.1 + 99696 0.81 0.236222
Target:  5'- -aUGAGGC-GCGCCAGCUCcGCCACGg -3'
miRNA:   3'- acAUUUUGaCGCGGUCGAGcCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 108204 0.79 0.287245
Target:  5'- --gAGAGCUGCGCCAGCaCGGCgCGCu -3'
miRNA:   3'- acaUUUUGACGCGGUCGaGCCG-GUGc -5'
23610 5' -54.2 NC_005261.1 + 53230 0.78 0.362689
Target:  5'- gGUGGGAUgcgGCGCCAGCUCGccCCGCGc -3'
miRNA:   3'- aCAUUUUGa--CGCGGUCGAGCc-GGUGC- -5'
23610 5' -54.2 NC_005261.1 + 73368 0.77 0.379337
Target:  5'- ---cAGGCgGCGCCAGCagcgCGGCCACGc -3'
miRNA:   3'- acauUUUGaCGCGGUCGa---GCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 82790 0.77 0.379337
Target:  5'- ---cGAAgaGCGCCAGCUCcGCCGCGg -3'
miRNA:   3'- acauUUUgaCGCGGUCGAGcCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 102161 0.77 0.387851
Target:  5'- ----cAGCUGCGCCAGCggCGGCgGCa -3'
miRNA:   3'- acauuUUGACGCGGUCGa-GCCGgUGc -5'
23610 5' -54.2 NC_005261.1 + 103347 0.77 0.387851
Target:  5'- gGUAcAGCUccgcGCGCCgcucccccAGCUCGGCCGCGc -3'
miRNA:   3'- aCAUuUUGA----CGCGG--------UCGAGCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 59472 0.76 0.423136
Target:  5'- cGggGGGCaGCGCCGGCgCGGCCGCc -3'
miRNA:   3'- aCauUUUGaCGCGGUCGaGCCGGUGc -5'
23610 5' -54.2 NC_005261.1 + 3473 0.76 0.460277
Target:  5'- cGUcGAguACcGCGCCAGCggGGCCACGg -3'
miRNA:   3'- aCAuUU--UGaCGCGGUCGagCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 118114 0.74 0.519014
Target:  5'- --aGAcGCUGCGCCgccGGCUCGcGCCGCu -3'
miRNA:   3'- acaUUuUGACGCGG---UCGAGC-CGGUGc -5'
23610 5' -54.2 NC_005261.1 + 115810 0.74 0.546412
Target:  5'- -aUGAGGCucacgcacacgcggUGCGCCAGCUUGGgCGCGu -3'
miRNA:   3'- acAUUUUG--------------ACGCGGUCGAGCCgGUGC- -5'
23610 5' -54.2 NC_005261.1 + 43365 0.74 0.549486
Target:  5'- gGUGccGCUGCGgCGGCaUCGGCCucGCGg -3'
miRNA:   3'- aCAUuuUGACGCgGUCG-AGCCGG--UGC- -5'
23610 5' -54.2 NC_005261.1 + 3874 0.74 0.549486
Target:  5'- cGgcGAGCacgGCGCgCAGCUCGGCgagCGCGg -3'
miRNA:   3'- aCauUUUGa--CGCG-GUCGAGCCG---GUGC- -5'
23610 5' -54.2 NC_005261.1 + 32200 0.74 0.559769
Target:  5'- -cUGGAGCUgGCGCCcgacgAGCUgcCGGCCGCGg -3'
miRNA:   3'- acAUUUUGA-CGCGG-----UCGA--GCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 101702 0.74 0.559769
Target:  5'- cGUGGucgaagcgcuccAGCUGCGCCAGCgCGcCCGCGa -3'
miRNA:   3'- aCAUU------------UUGACGCGGUCGaGCcGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 51764 0.73 0.59091
Target:  5'- cGUGAAGCUgGCGCUGGC-CGGCguCGc -3'
miRNA:   3'- aCAUUUUGA-CGCGGUCGaGCCGguGC- -5'
23610 5' -54.2 NC_005261.1 + 122684 0.73 0.595088
Target:  5'- cGUc-AGCUGCGCCuGCUCcaucgccgcgccgccGGCCGCGc -3'
miRNA:   3'- aCAuuUUGACGCGGuCGAG---------------CCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.