miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23610 5' -54.2 NC_005261.1 + 252 0.68 0.847044
Target:  5'- ----cGGCUGCGgCGGCggcugCGGCgGCGg -3'
miRNA:   3'- acauuUUGACGCgGUCGa----GCCGgUGC- -5'
23610 5' -54.2 NC_005261.1 + 288 0.68 0.847044
Target:  5'- ----cGGCUGCGgCGGCggcugCGGCgGCGg -3'
miRNA:   3'- acauuUUGACGCgGUCGa----GCCGgUGC- -5'
23610 5' -54.2 NC_005261.1 + 312 0.68 0.870684
Target:  5'- ----nGGCUGCGgCGGCggcugCGGCgGCGg -3'
miRNA:   3'- acauuUUGACGCgGUCGa----GCCGgUGC- -5'
23610 5' -54.2 NC_005261.1 + 543 0.69 0.812689
Target:  5'- --cAGGGCgGaCGgCGGCUCGGCCGCc -3'
miRNA:   3'- acaUUUUGaC-GCgGUCGAGCCGGUGc -5'
23610 5' -54.2 NC_005261.1 + 1169 0.68 0.855139
Target:  5'- --------cGCGCCGGCcCGcGCCGCGg -3'
miRNA:   3'- acauuuugaCGCGGUCGaGC-CGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 1271 0.72 0.664299
Target:  5'- gGU--GACUGUGCCGGCgcccaGGCCGgCGg -3'
miRNA:   3'- aCAuuUUGACGCGGUCGag---CCGGU-GC- -5'
23610 5' -54.2 NC_005261.1 + 1818 0.7 0.785083
Target:  5'- gGUAGAGCcGCGCguaagCGGcCUCGGCgCGCGc -3'
miRNA:   3'- aCAUUUUGaCGCG-----GUC-GAGCCG-GUGC- -5'
23610 5' -54.2 NC_005261.1 + 2465 0.68 0.881033
Target:  5'- aGgcGAGCgccggGCGCCagGGCUCGGggaagagcgggugguCCGCGa -3'
miRNA:   3'- aCauUUUGa----CGCGG--UCGAGCC---------------GGUGC- -5'
23610 5' -54.2 NC_005261.1 + 2976 0.68 0.855139
Target:  5'- ---cGGGCUGagGCUggGGCUCGGCCugGc -3'
miRNA:   3'- acauUUUGACg-CGG--UCGAGCCGGugC- -5'
23610 5' -54.2 NC_005261.1 + 3473 0.76 0.460277
Target:  5'- cGUcGAguACcGCGCCAGCggGGCCACGg -3'
miRNA:   3'- aCAuUU--UGaCGCGGUCGagCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 3661 0.66 0.939198
Target:  5'- -cUGGAGCgcagGCcgcgGCCGGCa-GGCCGCGg -3'
miRNA:   3'- acAUUUUGa---CG----CGGUCGagCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 3874 0.74 0.549486
Target:  5'- cGgcGAGCacgGCGCgCAGCUCGGCgagCGCGg -3'
miRNA:   3'- aCauUUUGa--CGCG-GUCGAGCCG---GUGC- -5'
23610 5' -54.2 NC_005261.1 + 4035 0.67 0.89903
Target:  5'- cGUGcgGCaGCGCCcacAGCgcguucugcgCGGCCAUGg -3'
miRNA:   3'- aCAUuuUGaCGCGG---UCGa---------GCCGGUGC- -5'
23610 5' -54.2 NC_005261.1 + 5109 0.71 0.726231
Target:  5'- ----cAGCUcCGCCAGCUCGG-CGCGg -3'
miRNA:   3'- acauuUUGAcGCGGUCGAGCCgGUGC- -5'
23610 5' -54.2 NC_005261.1 + 5896 0.7 0.746296
Target:  5'- ----cGGCUG-GCUAGCUCGGCCGg- -3'
miRNA:   3'- acauuUUGACgCGGUCGAGCCGGUgc -5'
23610 5' -54.2 NC_005261.1 + 5959 0.66 0.928976
Target:  5'- cGgcuGGCUG-GCUAGCUCGGCUccucugccGCGc -3'
miRNA:   3'- aCauuUUGACgCGGUCGAGCCGG--------UGC- -5'
23610 5' -54.2 NC_005261.1 + 7592 0.68 0.878122
Target:  5'- cGUAccGC-GCGCCuGCUuaccCGGCCGCu -3'
miRNA:   3'- aCAUuuUGaCGCGGuCGA----GCCGGUGc -5'
23610 5' -54.2 NC_005261.1 + 8491 0.71 0.716065
Target:  5'- uUGUAuuuUUGCGCCAGCgggggggcCGGCCAa- -3'
miRNA:   3'- -ACAUuuuGACGCGGUCGa-------GCCGGUgc -5'
23610 5' -54.2 NC_005261.1 + 8771 0.68 0.847044
Target:  5'- --gGGAACcGUGCCAGCUCuGCCccucgGCGg -3'
miRNA:   3'- acaUUUUGaCGCGGUCGAGcCGG-----UGC- -5'
23610 5' -54.2 NC_005261.1 + 10911 0.67 0.885329
Target:  5'- ----cGGCaGCGCCGccGC-CGGCCGCGa -3'
miRNA:   3'- acauuUUGaCGCGGU--CGaGCCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.