Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23611 | 3' | -55.7 | NC_005261.1 | + | 119688 | 0.72 | 0.577031 |
Target: 5'- cGUCGg-CAGGUCCc---GCUCCACGCg -3' miRNA: 3'- -CAGCagGUCCAGGuacaCGAGGUGUG- -5' |
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23611 | 3' | -55.7 | NC_005261.1 | + | 124498 | 0.78 | 0.287233 |
Target: 5'- aUCGagaauUCCGGGUCCAccGUGCUCCACGu -3' miRNA: 3'- cAGC-----AGGUCCAGGUa-CACGAGGUGUg -5' |
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23611 | 3' | -55.7 | NC_005261.1 | + | 125009 | 0.69 | 0.751221 |
Target: 5'- --gGUCCGGG-CCGUGcGCUCCAgCAg -3' miRNA: 3'- cagCAGGUCCaGGUACaCGAGGU-GUg -5' |
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23611 | 3' | -55.7 | NC_005261.1 | + | 127060 | 0.75 | 0.40391 |
Target: 5'- cGUCGUaCGGGUCCAUgGUGCcgccgCCGCGCc -3' miRNA: 3'- -CAGCAgGUCCAGGUA-CACGa----GGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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