miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 60361 0.66 0.716199
Target:  5'- cGCGCCaGGcAGUGCuuGGUCUCGUuGGCGa -3'
miRNA:   3'- -CGCGGaCC-UCGUG--CCGGGGCAuCUGC- -5'
23611 5' -60.9 NC_005261.1 + 59480 0.66 0.70654
Target:  5'- aGCGCC---GGCGCGGCCgCCGcgccagcGGCGg -3'
miRNA:   3'- -CGCGGaccUCGUGCCGG-GGCau-----CUGC- -5'
23611 5' -60.9 NC_005261.1 + 32527 0.66 0.70654
Target:  5'- cGCGCCcGGccC-CGGCCCCGgccgcGGCGc -3'
miRNA:   3'- -CGCGGaCCucGuGCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 76437 0.66 0.696822
Target:  5'- gGCGCCaUGGcGgACGcGCCCgaCGgcGACGg -3'
miRNA:   3'- -CGCGG-ACCuCgUGC-CGGG--GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 102504 0.66 0.696822
Target:  5'- aGCGCCUGGGccuuGCGCaGGUCCgCGU--GCa -3'
miRNA:   3'- -CGCGGACCU----CGUG-CCGGG-GCAucUGc -5'
23611 5' -60.9 NC_005261.1 + 30772 0.66 0.696822
Target:  5'- cGgGCC-GGAGCcCGGCCgCGgcGGugGa -3'
miRNA:   3'- -CgCGGaCCUCGuGCCGGgGCa-UCugC- -5'
23611 5' -60.9 NC_005261.1 + 51417 0.66 0.696822
Target:  5'- cGCGCCcaccgccuGCugGGCCCCG--GGCGc -3'
miRNA:   3'- -CGCGGaccu----CGugCCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 130177 0.66 0.696822
Target:  5'- gGCGCCggcagcagGGAGCugACGGCcaccaccgccuCCUGcAGGCGg -3'
miRNA:   3'- -CGCGGa-------CCUCG--UGCCG-----------GGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 75326 0.66 0.700716
Target:  5'- gGCGCgC-GGAGCccugugaccuucguCGGCCUCGUGGAg- -3'
miRNA:   3'- -CGCG-GaCCUCGu-------------GCCGGGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 9987 0.66 0.705571
Target:  5'- cGCGCCUcG-GCGCGGCcacccgcuugccaCCCGaccGGGCGg -3'
miRNA:   3'- -CGCGGAcCuCGUGCCG-------------GGGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 19942 0.66 0.70654
Target:  5'- aGCGuCCUGGgcggggguGGgGCGGCCUCGgcuGCGg -3'
miRNA:   3'- -CGC-GGACC--------UCgUGCCGGGGCaucUGC- -5'
23611 5' -60.9 NC_005261.1 + 34609 0.66 0.70654
Target:  5'- -gGCCUGGccgacgcGCugGaGCCCCuGaUAGGCGa -3'
miRNA:   3'- cgCGGACCu------CGugC-CGGGG-C-AUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 69761 0.66 0.70654
Target:  5'- aGCGC--GGGGgGCGGCgCCGgGGACu -3'
miRNA:   3'- -CGCGgaCCUCgUGCCGgGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 127346 0.66 0.70654
Target:  5'- aGCGgCgGGGcGCugGGCCCgCGUGG-Cu -3'
miRNA:   3'- -CGCgGaCCU-CGugCCGGG-GCAUCuGc -5'
23611 5' -60.9 NC_005261.1 + 11901 0.66 0.70654
Target:  5'- cGCGCCcgccGcGGGCcCGGCCCgGccGGCGg -3'
miRNA:   3'- -CGCGGa---C-CUCGuGCCGGGgCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 62299 0.67 0.647632
Target:  5'- gGCGCCgcgcgGGcGCgcgGCGGCCCCGcGGuCc -3'
miRNA:   3'- -CGCGGa----CCuCG---UGCCGGGGCaUCuGc -5'
23611 5' -60.9 NC_005261.1 + 3917 0.67 0.647632
Target:  5'- cGCGCCgccGGcGC-CGGCCUCcggGUAGGCc -3'
miRNA:   3'- -CGCGGa--CCuCGuGCCGGGG---CAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 109321 0.67 0.647632
Target:  5'- -gGCCUccGcGAGCGCGGCCgCGgggucGGCGg -3'
miRNA:   3'- cgCGGA--C-CUCGUGCCGGgGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 133375 0.67 0.647632
Target:  5'- gGCuGCCUGc-GCGCGGCCCac-GGGCGc -3'
miRNA:   3'- -CG-CGGACcuCGUGCCGGGgcaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 34917 0.67 0.647632
Target:  5'- -gGUC-GGGGCGCGGCCaCgCGggGGGCGg -3'
miRNA:   3'- cgCGGaCCUCGUGCCGG-G-GCa-UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.