Results 61 - 80 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23611 | 5' | -60.9 | NC_005261.1 | + | 25276 | 0.67 | 0.617918 |
Target: 5'- uCGCCgcgagGGGGCGCGGUCuguggCCGUGaGCGu -3' miRNA: 3'- cGCGGa----CCUCGUGCCGG-----GGCAUcUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 111779 | 0.67 | 0.617918 |
Target: 5'- cGCGCCcGGGGUgu-GCCCC-UGGACGc -3' miRNA: 3'- -CGCGGaCCUCGugcCGGGGcAUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 98317 | 0.67 | 0.617918 |
Target: 5'- gGCGCCgccgccagcGGcGGCGC-GCCCCGUGucGACGc -3' miRNA: 3'- -CGCGGa--------CC-UCGUGcCGGGGCAU--CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 27244 | 0.67 | 0.61198 |
Target: 5'- gGCGCCUGGGGUggGGCggggugugcgggcagCCCGgccGGCc -3' miRNA: 3'- -CGCGGACCUCGugCCG---------------GGGCau-CUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 110464 | 0.67 | 0.608024 |
Target: 5'- gGUGCCUGGGcGgGCuGCuCUCGUGGACc -3' miRNA: 3'- -CGCGGACCU-CgUGcCG-GGGCAUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 110301 | 0.67 | 0.607035 |
Target: 5'- gGCGCCUGcgccgccGAGUACGGCaaccgcgccgCCGcGGACGc -3' miRNA: 3'- -CGCGGAC-------CUCGUGCCGg---------GGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 122352 | 0.67 | 0.631785 |
Target: 5'- uCGCCUGGcggccgcggcucGCGCGGCCCCaccgcggccuggGGGCGc -3' miRNA: 3'- cGCGGACCu-----------CGUGCCGGGGca----------UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 44732 | 0.67 | 0.637729 |
Target: 5'- gGCGCUgc-AGCugGGCCCCG-AGcuGCGc -3' miRNA: 3'- -CGCGGaccUCGugCCGGGGCaUC--UGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 134522 | 0.67 | 0.637729 |
Target: 5'- uGCGCCUGcagcugcuGGGCGCGcagacgugaccGCCCCuugcUGGGCGg -3' miRNA: 3'- -CGCGGAC--------CUCGUGC-----------CGGGGc---AUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 133375 | 0.67 | 0.647632 |
Target: 5'- gGCuGCCUGc-GCGCGGCCCac-GGGCGc -3' miRNA: 3'- -CG-CGGACcuCGUGCCGGGgcaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 109321 | 0.67 | 0.647632 |
Target: 5'- -gGCCUccGcGAGCGCGGCCgCGgggucGGCGg -3' miRNA: 3'- cgCGGA--C-CUCGUGCCGGgGCau---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 3917 | 0.67 | 0.647632 |
Target: 5'- cGCGCCgccGGcGC-CGGCCUCcggGUAGGCc -3' miRNA: 3'- -CGCGGa--CCuCGuGCCGGGG---CAUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 62299 | 0.67 | 0.647632 |
Target: 5'- gGCGCCgcgcgGGcGCgcgGCGGCCCCGcGGuCc -3' miRNA: 3'- -CGCGGa----CCuCG---UGCCGGGGCaUCuGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 34917 | 0.67 | 0.647632 |
Target: 5'- -gGUC-GGGGCGCGGCCaCgCGggGGGCGg -3' miRNA: 3'- cgCGGaCCUCGUGCCGG-G-GCa-UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 73214 | 0.67 | 0.647632 |
Target: 5'- gGCGCCUcgaGGGGCGCGGUggCCGcgAGcGCGa -3' miRNA: 3'- -CGCGGA---CCUCGUGCCGg-GGCa-UC-UGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 1454 | 0.67 | 0.644662 |
Target: 5'- gGCGCCUcGGcgugcggcuccagcAGCGCGGCCgCGcAGAa- -3' miRNA: 3'- -CGCGGA-CC--------------UCGUGCCGGgGCaUCUgc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 43430 | 0.67 | 0.637729 |
Target: 5'- cCGCCggcggGGAGCuggcuCGGCgCC-UGGACGu -3' miRNA: 3'- cGCGGa----CCUCGu----GCCGgGGcAUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 5490 | 0.67 | 0.637729 |
Target: 5'- cGCGCCgggggguagcUGGGGcCGCGGCagCGgcGGCGa -3' miRNA: 3'- -CGCGG----------ACCUC-GUGCCGggGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 1308 | 0.67 | 0.637729 |
Target: 5'- uCGCCggcGGcGGCACGcGCUCCG-GGACGc -3' miRNA: 3'- cGCGGa--CC-UCGUGC-CGGGGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 12724 | 0.67 | 0.598147 |
Target: 5'- gGCGCgCgGGcccGC-CGGCCCCcUGGGCGg -3' miRNA: 3'- -CGCG-GaCCu--CGuGCCGGGGcAUCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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