miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 5490 0.67 0.637729
Target:  5'- cGCGCCgggggguagcUGGGGcCGCGGCagCGgcGGCGa -3'
miRNA:   3'- -CGCGG----------ACCUC-GUGCCGggGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 1308 0.67 0.637729
Target:  5'- uCGCCggcGGcGGCACGcGCUCCG-GGACGc -3'
miRNA:   3'- cGCGGa--CC-UCGUGC-CGGGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 134522 0.67 0.637729
Target:  5'- uGCGCCUGcagcugcuGGGCGCGcagacgugaccGCCCCuugcUGGGCGg -3'
miRNA:   3'- -CGCGGAC--------CUCGUGC-----------CGGGGc---AUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 44732 0.67 0.637729
Target:  5'- gGCGCUgc-AGCugGGCCCCG-AGcuGCGc -3'
miRNA:   3'- -CGCGGaccUCGugCCGGGGCaUC--UGC- -5'
23611 5' -60.9 NC_005261.1 + 135775 0.68 0.575528
Target:  5'- gGCGCa--GAGCGCGuGCCgcugucggaggugaCCGUGGGCGa -3'
miRNA:   3'- -CGCGgacCUCGUGC-CGG--------------GGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 63016 0.68 0.568681
Target:  5'- cGCGCCcgcGcGGGCGcCGGCgCCCGcggcgAGGCGg -3'
miRNA:   3'- -CGCGGa--C-CUCGU-GCCG-GGGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 108419 0.68 0.568681
Target:  5'- cGCGCCUGcGuGCACGGCaaccgcguCCCGgccgAGcaGCGc -3'
miRNA:   3'- -CGCGGAC-CuCGUGCCG--------GGGCa---UC--UGC- -5'
23611 5' -60.9 NC_005261.1 + 101093 0.68 0.568681
Target:  5'- cCGCCUGcAGCGCGGCCgCGcgcgccuuGGCGc -3'
miRNA:   3'- cGCGGACcUCGUGCCGGgGCau------CUGC- -5'
23611 5' -60.9 NC_005261.1 + 119663 0.68 0.568681
Target:  5'- cGCGCCUGGAGCucUGGUUCCagcgcGUcGGCa -3'
miRNA:   3'- -CGCGGACCUCGu-GCCGGGG-----CAuCUGc -5'
23611 5' -60.9 NC_005261.1 + 90740 0.68 0.568681
Target:  5'- cGCGCCUGaGgcgcuGGCGCGGgacuuCCCCG-AGGCc -3'
miRNA:   3'- -CGCGGAC-C-----UCGUGCC-----GGGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 60278 0.68 0.568681
Target:  5'- gGCGCCcGGGGUccgcccccGCGGCCCgcaggcaguCGgcugAGACGa -3'
miRNA:   3'- -CGCGGaCCUCG--------UGCCGGG---------GCa---UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 118997 0.68 0.578469
Target:  5'- uGCGUCgGGGccuGCugGGCCCgCGccGACGa -3'
miRNA:   3'- -CGCGGaCCU---CGugCCGGG-GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 40678 0.68 0.578469
Target:  5'- aCGCCgucggGGAGC-CGGCgCCGgccGGGCu -3'
miRNA:   3'- cGCGGa----CCUCGuGCCGgGGCa--UCUGc -5'
23611 5' -60.9 NC_005261.1 + 56127 0.68 0.578469
Target:  5'- cGCGCCgcagggcggGGGGCGCGGgCCgaGgguGGCGg -3'
miRNA:   3'- -CGCGGa--------CCUCGUGCCgGGg-Cau-CUGC- -5'
23611 5' -60.9 NC_005261.1 + 78859 0.68 0.578469
Target:  5'- cCGCCgccGGAGCGCGaGCCgCGUcAGcCGg -3'
miRNA:   3'- cGCGGa--CCUCGUGC-CGGgGCA-UCuGC- -5'
23611 5' -60.9 NC_005261.1 + 3620 0.68 0.588292
Target:  5'- aGCuGCCcGGAGCACGcGCUCCG-GGuGCGc -3'
miRNA:   3'- -CG-CGGaCCUCGUGC-CGGGGCaUC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 33605 0.68 0.588292
Target:  5'- gGCGCCggcgcgGGcGGCGgGGCCCgG-GGGCGc -3'
miRNA:   3'- -CGCGGa-----CC-UCGUgCCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33774 0.68 0.588292
Target:  5'- gGgGCCcgcgGcGAGCGCugGGCCCCGcgcGGGCGg -3'
miRNA:   3'- -CgCGGa---C-CUCGUG--CCGGGGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 37988 0.68 0.588292
Target:  5'- uCGCgUGGAcGCgcuacGCGGCgCCCGaGGACGu -3'
miRNA:   3'- cGCGgACCU-CG-----UGCCG-GGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 30337 0.68 0.567704
Target:  5'- cGCGgCUGGcGGCcgcgcucGCGGCCCUGaAGGCc -3'
miRNA:   3'- -CGCgGACC-UCG-------UGCCGGGGCaUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.