Results 121 - 140 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23611 | 5' | -60.9 | NC_005261.1 | + | 91447 | 0.69 | 0.483099 |
Target: 5'- cGCGCUgcgcGGCACGGCCCCGcccGCGc -3' miRNA: 3'- -CGCGGacc-UCGUGCCGGGGCaucUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 21006 | 0.69 | 0.483099 |
Target: 5'- cGCGCCUugGGGGCGugacacCGaGCCCUGgGGGCGc -3' miRNA: 3'- -CGCGGA--CCUCGU------GC-CGGGGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 127649 | 0.69 | 0.483099 |
Target: 5'- gGCGCCgggGGGcGCGCGGgUUCGgggcgGGACGg -3' miRNA: 3'- -CGCGGa--CCU-CGUGCCgGGGCa----UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 105477 | 0.69 | 0.483099 |
Target: 5'- aGCuCCUcGGGGCGCgcgGGCCCCGagcccgccgAGACGa -3' miRNA: 3'- -CGcGGA-CCUCGUG---CCGGGGCa--------UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 110238 | 0.69 | 0.511021 |
Target: 5'- -aGCgUGGgcGGCGCGGCgCCCGggGGGCu -3' miRNA: 3'- cgCGgACC--UCGUGCCG-GGGCa-UCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 33065 | 0.69 | 0.520477 |
Target: 5'- gGCGCC-GGGGaCGCGGCgCUGgcGGCc -3' miRNA: 3'- -CGCGGaCCUC-GUGCCGgGGCauCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 108172 | 0.69 | 0.530002 |
Target: 5'- cCGCCaGGGcGCGCGGCCgCGgcuccGGGCGc -3' miRNA: 3'- cGCGGaCCU-CGUGCCGGgGCa----UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 135193 | 0.69 | 0.530002 |
Target: 5'- cGCGC--GGAGCAUGGCCgaGgcGGCGc -3' miRNA: 3'- -CGCGgaCCUCGUGCCGGggCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 82214 | 0.69 | 0.530002 |
Target: 5'- cCGCCacguacacguUGaGcAGCACGuCCCCGUAGACGc -3' miRNA: 3'- cGCGG----------AC-C-UCGUGCcGGGGCAUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 30806 | 0.69 | 0.530002 |
Target: 5'- gGgGCCggaGGAGCugGGggggCCCGgGGACGg -3' miRNA: 3'- -CgCGGa--CCUCGugCCg---GGGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 16065 | 0.69 | 0.530002 |
Target: 5'- cGCGCC--GAGC-CGGCgCgUGUAGACGa -3' miRNA: 3'- -CGCGGacCUCGuGCCG-GgGCAUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 130484 | 0.69 | 0.520477 |
Target: 5'- cGUGCCUcGGcGGCGagGGCCCCGacGACGu -3' miRNA: 3'- -CGCGGA-CC-UCGUg-CCGGGGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 118910 | 0.69 | 0.520477 |
Target: 5'- uGCGUCUGG-GUcCGGCgCCGcGGGCGc -3' miRNA: 3'- -CGCGGACCuCGuGCCGgGGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 79214 | 0.69 | 0.520477 |
Target: 5'- aUGCCUGacacggucgaGAGCGCGGCgCCCGc-GGCGc -3' miRNA: 3'- cGCGGAC----------CUCGUGCCG-GGGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 59416 | 0.7 | 0.455934 |
Target: 5'- gGCGCCggcgcUGucGCGCGGCCCgGcAGGCGc -3' miRNA: 3'- -CGCGG-----ACcuCGUGCCGGGgCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 4705 | 0.7 | 0.464899 |
Target: 5'- cGCGUCUuuGGCAuCGGCCCCGgagucGGCGg -3' miRNA: 3'- -CGCGGAccUCGU-GCCGGGGCau---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 32194 | 0.7 | 0.464899 |
Target: 5'- cGCGCgCUGGAGCugGcGCCC----GACGa -3' miRNA: 3'- -CGCG-GACCUCGugC-CGGGgcauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 130582 | 0.7 | 0.473956 |
Target: 5'- aGCGCCgcc-GCGCGGCCCCGcgccuGGCc -3' miRNA: 3'- -CGCGGaccuCGUGCCGGGGCau---CUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 83839 | 0.7 | 0.473956 |
Target: 5'- cCGCUggcGGGcCGCGGCCCCGcUGGGCu -3' miRNA: 3'- cGCGGa--CCUcGUGCCGGGGC-AUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 109234 | 0.7 | 0.447063 |
Target: 5'- cGCGCgCUGcAGCGCGGCCCaGUgcgGGGCc -3' miRNA: 3'- -CGCG-GACcUCGUGCCGGGgCA---UCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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