miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 70689 0.68 0.588292
Target:  5'- -aGCCaGGcguccAGCGCGGCCCgCGcGGGCa -3'
miRNA:   3'- cgCGGaCC-----UCGUGCCGGG-GCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 37988 0.68 0.588292
Target:  5'- uCGCgUGGAcGCgcuacGCGGCgCCCGaGGACGu -3'
miRNA:   3'- cGCGgACCU-CG-----UGCCG-GGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33774 0.68 0.588292
Target:  5'- gGgGCCcgcgGcGAGCGCugGGCCCCGcgcGGGCGg -3'
miRNA:   3'- -CgCGGa---C-CUCGUG--CCGGGGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33605 0.68 0.588292
Target:  5'- gGCGCCggcgcgGGcGGCGgGGCCCgG-GGGCGc -3'
miRNA:   3'- -CGCGGa-----CC-UCGUgCCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 3620 0.68 0.588292
Target:  5'- aGCuGCCcGGAGCACGcGCUCCG-GGuGCGc -3'
miRNA:   3'- -CG-CGGaCCUCGUGC-CGGGGCaUC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 78859 0.68 0.578469
Target:  5'- cCGCCgccGGAGCGCGaGCCgCGUcAGcCGg -3'
miRNA:   3'- cGCGGa--CCUCGUGC-CGGgGCA-UCuGC- -5'
23611 5' -60.9 NC_005261.1 + 40678 0.68 0.578469
Target:  5'- aCGCCgucggGGAGC-CGGCgCCGgccGGGCu -3'
miRNA:   3'- cGCGGa----CCUCGuGCCGgGGCa--UCUGc -5'
23611 5' -60.9 NC_005261.1 + 118997 0.68 0.578469
Target:  5'- uGCGUCgGGGccuGCugGGCCCgCGccGACGa -3'
miRNA:   3'- -CGCGGaCCU---CGugCCGGG-GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 135775 0.68 0.575528
Target:  5'- gGCGCa--GAGCGCGuGCCgcugucggaggugaCCGUGGGCGa -3'
miRNA:   3'- -CGCGgacCUCGUGC-CGG--------------GGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 63016 0.68 0.568681
Target:  5'- cGCGCCcgcGcGGGCGcCGGCgCCCGcggcgAGGCGg -3'
miRNA:   3'- -CGCGGa--C-CUCGU-GCCG-GGGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 108419 0.68 0.568681
Target:  5'- cGCGCCUGcGuGCACGGCaaccgcguCCCGgccgAGcaGCGc -3'
miRNA:   3'- -CGCGGAC-CuCGUGCCG--------GGGCa---UC--UGC- -5'
23611 5' -60.9 NC_005261.1 + 109321 0.67 0.647632
Target:  5'- -gGCCUccGcGAGCGCGGCCgCGgggucGGCGg -3'
miRNA:   3'- cgCGGA--C-CUCGUGCCGGgGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 3917 0.67 0.647632
Target:  5'- cGCGCCgccGGcGC-CGGCCUCcggGUAGGCc -3'
miRNA:   3'- -CGCGGa--CCuCGuGCCGGGG---CAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 62299 0.67 0.647632
Target:  5'- gGCGCCgcgcgGGcGCgcgGCGGCCCCGcGGuCc -3'
miRNA:   3'- -CGCGGa----CCuCG---UGCCGGGGCaUCuGc -5'
23611 5' -60.9 NC_005261.1 + 43306 0.67 0.651591
Target:  5'- gGCGCC-GGcAGCcCGGCCagcuucgcccgguaCGUAGACu -3'
miRNA:   3'- -CGCGGaCC-UCGuGCCGGg-------------GCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 133375 0.67 0.647632
Target:  5'- gGCuGCCUGc-GCGCGGCCCac-GGGCGc -3'
miRNA:   3'- -CG-CGGACcuCGUGCCGGGgcaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 34917 0.67 0.647632
Target:  5'- -gGUC-GGGGCGCGGCCaCgCGggGGGCGg -3'
miRNA:   3'- cgCGGaCCUCGUGCCGG-G-GCa-UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 1454 0.67 0.644662
Target:  5'- gGCGCCUcGGcgugcggcuccagcAGCGCGGCCgCGcAGAa- -3'
miRNA:   3'- -CGCGGA-CC--------------UCGUGCCGGgGCaUCUgc -5'
23611 5' -60.9 NC_005261.1 + 37177 0.67 0.598147
Target:  5'- uGCGCCUGGGcGCugcugGCGGCgCUGcuGGCGg -3'
miRNA:   3'- -CGCGGACCU-CG-----UGCCGgGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 34236 0.67 0.596173
Target:  5'- cGCGgccgucaUCUGGGGCGaagacuacgacgcCGGgCCCGUAGACc -3'
miRNA:   3'- -CGC-------GGACCUCGU-------------GCCgGGGCAUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.