miRNA display CGI


Results 121 - 140 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 109321 0.67 0.647632
Target:  5'- -gGCCUccGcGAGCGCGGCCgCGgggucGGCGg -3'
miRNA:   3'- cgCGGA--C-CUCGUGCCGGgGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 133375 0.67 0.647632
Target:  5'- gGCuGCCUGc-GCGCGGCCCac-GGGCGc -3'
miRNA:   3'- -CG-CGGACcuCGUGCCGGGgcaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 43306 0.67 0.651591
Target:  5'- gGCGCC-GGcAGCcCGGCCagcuucgcccgguaCGUAGACu -3'
miRNA:   3'- -CGCGGaCC-UCGuGCCGGg-------------GCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 44732 0.67 0.637729
Target:  5'- gGCGCUgc-AGCugGGCCCCG-AGcuGCGc -3'
miRNA:   3'- -CGCGGaccUCGugCCGGGGCaUC--UGC- -5'
23611 5' -60.9 NC_005261.1 + 122352 0.67 0.631785
Target:  5'- uCGCCUGGcggccgcggcucGCGCGGCCCCaccgcggccuggGGGCGc -3'
miRNA:   3'- cGCGGACCu-----------CGUGCCGGGGca----------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 92313 0.67 0.627822
Target:  5'- aGCGCCgcgcGGuccGCGCGGCCcauCCGcGGGCc -3'
miRNA:   3'- -CGCGGa---CCu--CGUGCCGG---GGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 110464 0.67 0.608024
Target:  5'- gGUGCCUGGGcGgGCuGCuCUCGUGGACc -3'
miRNA:   3'- -CGCGGACCU-CgUGcCG-GGGCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 87105 0.67 0.627822
Target:  5'- cGCGCa--GAGCGCGGCgUUGUAGAa- -3'
miRNA:   3'- -CGCGgacCUCGUGCCGgGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 34236 0.67 0.596173
Target:  5'- cGCGgccgucaUCUGGGGCGaagacuacgacgcCGGgCCCGUAGACc -3'
miRNA:   3'- -CGC-------GGACCUCGU-------------GCCgGGGCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 37177 0.67 0.598147
Target:  5'- uGCGCCUGGGcGCugcugGCGGCgCUGcuGGCGg -3'
miRNA:   3'- -CGCGGACCU-CG-----UGCCGgGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 95638 0.67 0.598147
Target:  5'- aGCGgCUGGGcgagcgcgacGCGCGGCgCCGc-GACGg -3'
miRNA:   3'- -CGCgGACCU----------CGUGCCGgGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 98317 0.67 0.617918
Target:  5'- gGCGCCgccgccagcGGcGGCGC-GCCCCGUGucGACGc -3'
miRNA:   3'- -CGCGGa--------CC-UCGUGcCGGGGCAU--CUGC- -5'
23611 5' -60.9 NC_005261.1 + 111779 0.67 0.617918
Target:  5'- cGCGCCcGGGGUgu-GCCCC-UGGACGc -3'
miRNA:   3'- -CGCGGaCCUCGugcCGGGGcAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 25276 0.67 0.617918
Target:  5'- uCGCCgcgagGGGGCGCGGUCuguggCCGUGaGCGu -3'
miRNA:   3'- cGCGGa----CCUCGUGCCGG-----GGCAUcUGC- -5'
23611 5' -60.9 NC_005261.1 + 3552 0.67 0.627822
Target:  5'- aGCGCg-GcGGGCGCGGCgCCGcuaAGGCGc -3'
miRNA:   3'- -CGCGgaC-CUCGUGCCGgGGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 29131 0.67 0.627822
Target:  5'- gGCGCC-GGGGgGC-GCCCCGccGGACc -3'
miRNA:   3'- -CGCGGaCCUCgUGcCGGGGCa-UCUGc -5'
23611 5' -60.9 NC_005261.1 + 31557 0.67 0.627822
Target:  5'- aCGCCUGG-GC-CGGgUCC-UGGACGg -3'
miRNA:   3'- cGCGGACCuCGuGCCgGGGcAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 12724 0.67 0.598147
Target:  5'- gGCGCgCgGGcccGC-CGGCCCCcUGGGCGg -3'
miRNA:   3'- -CGCG-GaCCu--CGuGCCGGGGcAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 110301 0.67 0.607035
Target:  5'- gGCGCCUGcgccgccGAGUACGGCaaccgcgccgCCGcGGACGc -3'
miRNA:   3'- -CGCGGAC-------CUCGUGCCGg---------GGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 27244 0.67 0.61198
Target:  5'- gGCGCCUGGGGUggGGCggggugugcgggcagCCCGgccGGCc -3'
miRNA:   3'- -CGCGGACCUCGugCCG---------------GGGCau-CUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.