miRNA display CGI


Results 141 - 160 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 76437 0.66 0.696822
Target:  5'- gGCGCCaUGGcGgACGcGCCCgaCGgcGACGg -3'
miRNA:   3'- -CGCGG-ACCuCgUGC-CGGG--GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 102504 0.66 0.696822
Target:  5'- aGCGCCUGGGccuuGCGCaGGUCCgCGU--GCa -3'
miRNA:   3'- -CGCGGACCU----CGUG-CCGGG-GCAucUGc -5'
23611 5' -60.9 NC_005261.1 + 30772 0.66 0.696822
Target:  5'- cGgGCC-GGAGCcCGGCCgCGgcGGugGa -3'
miRNA:   3'- -CgCGGaCCUCGuGCCGGgGCa-UCugC- -5'
23611 5' -60.9 NC_005261.1 + 11901 0.66 0.70654
Target:  5'- cGCGCCcgccGcGGGCcCGGCCCgGccGGCGg -3'
miRNA:   3'- -CGCGGa---C-CUCGuGCCGGGgCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 32527 0.66 0.70654
Target:  5'- cGCGCCcGGccC-CGGCCCCGgccgcGGCGc -3'
miRNA:   3'- -CGCGGaCCucGuGCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 59480 0.66 0.70654
Target:  5'- aGCGCC---GGCGCGGCCgCCGcgccagcGGCGg -3'
miRNA:   3'- -CGCGGaccUCGUGCCGG-GGCau-----CUGC- -5'
23611 5' -60.9 NC_005261.1 + 62558 0.66 0.70654
Target:  5'- gGCGCCgccAGCAUGcGCCCCGgcGccACGc -3'
miRNA:   3'- -CGCGGaccUCGUGC-CGGGGCauC--UGC- -5'
23611 5' -60.9 NC_005261.1 + 45644 0.66 0.70654
Target:  5'- cGCGCC-GGAGCAguGCCCaGcGGGCGu -3'
miRNA:   3'- -CGCGGaCCUCGUgcCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 13460 0.66 0.696822
Target:  5'- gGCGCCUcGGGguggaagauGCAC-GUCUCGUAGAUGc -3'
miRNA:   3'- -CGCGGA-CCU---------CGUGcCGGGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 71790 0.66 0.696822
Target:  5'- cGCaGCU--GAGCGCGGCccggCCCGUggGGACGu -3'
miRNA:   3'- -CG-CGGacCUCGUGCCG----GGGCA--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 59521 0.66 0.696822
Target:  5'- cGCGcCCUGGAGCA--GCCCCGccGcCa -3'
miRNA:   3'- -CGC-GGACCUCGUgcCGGGGCauCuGc -5'
23611 5' -60.9 NC_005261.1 + 46284 0.66 0.696822
Target:  5'- gGCGCuCUGGccgggcaacGGCGCGccgcaguaGCCCCGcgAGGCu -3'
miRNA:   3'- -CGCG-GACC---------UCGUGC--------CGGGGCa-UCUGc -5'
23611 5' -60.9 NC_005261.1 + 125698 0.66 0.657524
Target:  5'- cGgGCUUGGcccGGCgACGGCCgCCGcGGGCu -3'
miRNA:   3'- -CgCGGACC---UCG-UGCCGG-GGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 27360 0.66 0.657524
Target:  5'- gGCGCC-GGAccgGCGCGaGgCCgGUGGGCa -3'
miRNA:   3'- -CGCGGaCCU---CGUGC-CgGGgCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 65508 0.66 0.661476
Target:  5'- gGCGUCaUGGcgcacuccaucacccAGCGCGGCCgCGcGGGCa -3'
miRNA:   3'- -CGCGG-ACC---------------UCGUGCCGGgGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 135001 0.66 0.66641
Target:  5'- gGCGCCccUGGcGCggcgggcccgcacGCGGCCgCGgcGGCGa -3'
miRNA:   3'- -CGCGG--ACCuCG-------------UGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 71213 0.66 0.667397
Target:  5'- uGCGCgaUGGuGCgcgcgcgcacGCGGCCCuCGgcGGCGc -3'
miRNA:   3'- -CGCGg-ACCuCG----------UGCCGGG-GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 74690 0.66 0.667397
Target:  5'- cGCGCg-GGAGC-UGGCCgCCGcgcGGGCGc -3'
miRNA:   3'- -CGCGgaCCUCGuGCCGG-GGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 132549 0.66 0.667397
Target:  5'- cGCGCgaGGgcgaggcgcAGUACGGCUgCGaAGACGu -3'
miRNA:   3'- -CGCGgaCC---------UCGUGCCGGgGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 30217 0.66 0.695848
Target:  5'- cCGCgCUGGcGGCGCgaaccguGGCCCCGcUGGcGCGg -3'
miRNA:   3'- cGCG-GACC-UCGUG-------CCGGGGC-AUC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.