miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 63016 0.68 0.568681
Target:  5'- cGCGCCcgcGcGGGCGcCGGCgCCCGcggcgAGGCGg -3'
miRNA:   3'- -CGCGGa--C-CUCGU-GCCG-GGGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 135775 0.68 0.575528
Target:  5'- gGCGCa--GAGCGCGuGCCgcugucggaggugaCCGUGGGCGa -3'
miRNA:   3'- -CGCGgacCUCGUGC-CGG--------------GGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 56127 0.68 0.578469
Target:  5'- cGCGCCgcagggcggGGGGCGCGGgCCgaGgguGGCGg -3'
miRNA:   3'- -CGCGGa--------CCUCGUGCCgGGg-Cau-CUGC- -5'
23611 5' -60.9 NC_005261.1 + 118997 0.68 0.578469
Target:  5'- uGCGUCgGGGccuGCugGGCCCgCGccGACGa -3'
miRNA:   3'- -CGCGGaCCU---CGugCCGGG-GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 78859 0.68 0.578469
Target:  5'- cCGCCgccGGAGCGCGaGCCgCGUcAGcCGg -3'
miRNA:   3'- cGCGGa--CCUCGUGC-CGGgGCA-UCuGC- -5'
23611 5' -60.9 NC_005261.1 + 40678 0.68 0.578469
Target:  5'- aCGCCgucggGGAGC-CGGCgCCGgccGGGCu -3'
miRNA:   3'- cGCGGa----CCUCGuGCCGgGGCa--UCUGc -5'
23611 5' -60.9 NC_005261.1 + 33774 0.68 0.588292
Target:  5'- gGgGCCcgcgGcGAGCGCugGGCCCCGcgcGGGCGg -3'
miRNA:   3'- -CgCGGa---C-CUCGUG--CCGGGGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 70689 0.68 0.588292
Target:  5'- -aGCCaGGcguccAGCGCGGCCCgCGcGGGCa -3'
miRNA:   3'- cgCGGaCC-----UCGUGCCGGG-GCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 37988 0.68 0.588292
Target:  5'- uCGCgUGGAcGCgcuacGCGGCgCCCGaGGACGu -3'
miRNA:   3'- cGCGgACCU-CG-----UGCCG-GGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33605 0.68 0.588292
Target:  5'- gGCGCCggcgcgGGcGGCGgGGCCCgG-GGGCGc -3'
miRNA:   3'- -CGCGGa-----CC-UCGUgCCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 3620 0.68 0.588292
Target:  5'- aGCuGCCcGGAGCACGcGCUCCG-GGuGCGc -3'
miRNA:   3'- -CG-CGGaCCUCGUGC-CGGGGCaUC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 34236 0.67 0.596173
Target:  5'- cGCGgccgucaUCUGGGGCGaagacuacgacgcCGGgCCCGUAGACc -3'
miRNA:   3'- -CGC-------GGACCUCGU-------------GCCgGGGCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 95638 0.67 0.598147
Target:  5'- aGCGgCUGGGcgagcgcgacGCGCGGCgCCGc-GACGg -3'
miRNA:   3'- -CGCgGACCU----------CGUGCCGgGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 12724 0.67 0.598147
Target:  5'- gGCGCgCgGGcccGC-CGGCCCCcUGGGCGg -3'
miRNA:   3'- -CGCG-GaCCu--CGuGCCGGGGcAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 37177 0.67 0.598147
Target:  5'- uGCGCCUGGGcGCugcugGCGGCgCUGcuGGCGg -3'
miRNA:   3'- -CGCGGACCU-CG-----UGCCGgGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 110301 0.67 0.607035
Target:  5'- gGCGCCUGcgccgccGAGUACGGCaaccgcgccgCCGcGGACGc -3'
miRNA:   3'- -CGCGGAC-------CUCGUGCCGg---------GGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 110464 0.67 0.608024
Target:  5'- gGUGCCUGGGcGgGCuGCuCUCGUGGACc -3'
miRNA:   3'- -CGCGGACCU-CgUGcCG-GGGCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 27244 0.67 0.61198
Target:  5'- gGCGCCUGGGGUggGGCggggugugcgggcagCCCGgccGGCc -3'
miRNA:   3'- -CGCGGACCUCGugCCG---------------GGGCau-CUGc -5'
23611 5' -60.9 NC_005261.1 + 98317 0.67 0.617918
Target:  5'- gGCGCCgccgccagcGGcGGCGC-GCCCCGUGucGACGc -3'
miRNA:   3'- -CGCGGa--------CC-UCGUGcCGGGGCAU--CUGC- -5'
23611 5' -60.9 NC_005261.1 + 111779 0.67 0.617918
Target:  5'- cGCGCCcGGGGUgu-GCCCC-UGGACGc -3'
miRNA:   3'- -CGCGGaCCUCGugcCGGGGcAUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.