miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 30337 0.68 0.567704
Target:  5'- cGCGgCUGGcGGCcgcgcucGCGGCCCUGaAGGCc -3'
miRNA:   3'- -CGCgGACC-UCG-------UGCCGGGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 2391 0.68 0.567704
Target:  5'- cGCGCUggcgGcGAGCGCgcccgcgGGCCCCGcgcGGCGg -3'
miRNA:   3'- -CGCGGa---C-CUCGUG-------CCGGGGCau-CUGC- -5'
23611 5' -60.9 NC_005261.1 + 52357 0.68 0.565752
Target:  5'- cCGCC-GGAGCcggagcccgcggcgGCGGCCCCGgucgucaGGGCc -3'
miRNA:   3'- cGCGGaCCUCG--------------UGCCGGGGCa------UCUGc -5'
23611 5' -60.9 NC_005261.1 + 130324 0.68 0.549236
Target:  5'- aGCGCCaUGGAcgGCcCGGCCgCGcucggGGACGc -3'
miRNA:   3'- -CGCGG-ACCU--CGuGCCGGgGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 5414 0.68 0.549236
Target:  5'- gGCGCCgcgaacgaaGGAGacgacCGCGGCCgCGgcGGCGg -3'
miRNA:   3'- -CGCGGa--------CCUC-----GUGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 39789 0.68 0.549236
Target:  5'- uCGCCggggGGcGGCGCGGCCgCCGgcgccAGGCu -3'
miRNA:   3'- cGCGGa---CC-UCGUGCCGG-GGCa----UCUGc -5'
23611 5' -60.9 NC_005261.1 + 71615 0.68 0.549236
Target:  5'- cGCgGCCcGG-GCGCGGgCCCGggcGGCGg -3'
miRNA:   3'- -CG-CGGaCCuCGUGCCgGGGCau-CUGC- -5'
23611 5' -60.9 NC_005261.1 + 98726 0.68 0.549236
Target:  5'- -gGCCUugGGGGCacGCGGCCgCGcGGGCGu -3'
miRNA:   3'- cgCGGA--CCUCG--UGCCGGgGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 122617 0.68 0.549236
Target:  5'- cGUGCCUGugcuugaacggcGAGCGCgaGGCCCggcgcgcguaCGUGGGCGc -3'
miRNA:   3'- -CGCGGAC------------CUCGUG--CCGGG----------GCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 134357 0.68 0.549236
Target:  5'- cGCGCCgccgcgcGGGGgGCGGCgCCGcuGGCGa -3'
miRNA:   3'- -CGCGGa------CCUCgUGCCGgGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 69089 0.68 0.53959
Target:  5'- uCGCgCUGGGGCAUGGCCagCUGcuacgGGGCGc -3'
miRNA:   3'- cGCG-GACCUCGUGCCGG--GGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 1394 0.68 0.53959
Target:  5'- aCGCCgGGcGcCGCGGCCgCGgcGGCGg -3'
miRNA:   3'- cGCGGaCCuC-GUGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 62207 0.68 0.53959
Target:  5'- aGCGCgaGGGugcGCGCGGCCgCGUcuGCGc -3'
miRNA:   3'- -CGCGgaCCU---CGUGCCGGgGCAucUGC- -5'
23611 5' -60.9 NC_005261.1 + 98287 0.68 0.53959
Target:  5'- aCGCCcGGcGCguccGCGGCCUCGgGGGCGg -3'
miRNA:   3'- cGCGGaCCuCG----UGCCGGGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 68593 0.68 0.53959
Target:  5'- cGgGCCgcgGGAGCGgGGCCgaCGgcGugGg -3'
miRNA:   3'- -CgCGGa--CCUCGUgCCGGg-GCauCugC- -5'
23611 5' -60.9 NC_005261.1 + 88141 0.68 0.53959
Target:  5'- cGCGCCgcgcgGGGGCGCcccGGCCgcgcagCCGggccgGGGCGa -3'
miRNA:   3'- -CGCGGa----CCUCGUG---CCGG------GGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 135193 0.69 0.530002
Target:  5'- cGCGC--GGAGCAUGGCCgaGgcGGCGc -3'
miRNA:   3'- -CGCGgaCCUCGUGCCGGggCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 82214 0.69 0.530002
Target:  5'- cCGCCacguacacguUGaGcAGCACGuCCCCGUAGACGc -3'
miRNA:   3'- cGCGG----------AC-C-UCGUGCcGGGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 30806 0.69 0.530002
Target:  5'- gGgGCCggaGGAGCugGGggggCCCGgGGACGg -3'
miRNA:   3'- -CgCGGa--CCUCGugCCg---GGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 16065 0.69 0.530002
Target:  5'- cGCGCC--GAGC-CGGCgCgUGUAGACGa -3'
miRNA:   3'- -CGCGGacCUCGuGCCG-GgGCAUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.