miRNA display CGI


Results 121 - 140 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 108172 0.69 0.530002
Target:  5'- cCGCCaGGGcGCGCGGCCgCGgcuccGGGCGc -3'
miRNA:   3'- cGCGGaCCU-CGUGCCGGgGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33065 0.69 0.520477
Target:  5'- gGCGCC-GGGGaCGCGGCgCUGgcGGCc -3'
miRNA:   3'- -CGCGGaCCUC-GUGCCGgGGCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 79214 0.69 0.520477
Target:  5'- aUGCCUGacacggucgaGAGCGCGGCgCCCGc-GGCGc -3'
miRNA:   3'- cGCGGAC----------CUCGUGCCG-GGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 118910 0.69 0.520477
Target:  5'- uGCGUCUGG-GUcCGGCgCCGcGGGCGc -3'
miRNA:   3'- -CGCGGACCuCGuGCCGgGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 130484 0.69 0.520477
Target:  5'- cGUGCCUcGGcGGCGagGGCCCCGacGACGu -3'
miRNA:   3'- -CGCGGA-CC-UCGUg-CCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 110238 0.69 0.511021
Target:  5'- -aGCgUGGgcGGCGCGGCgCCCGggGGGCu -3'
miRNA:   3'- cgCGgACC--UCGUGCCG-GGGCa-UCUGc -5'
23611 5' -60.9 NC_005261.1 + 35814 0.69 0.511021
Target:  5'- -gGCCUGGAcCcCGGCCCCG-AGAg- -3'
miRNA:   3'- cgCGGACCUcGuGCCGGGGCaUCUgc -5'
23611 5' -60.9 NC_005261.1 + 68824 0.69 0.507258
Target:  5'- aCGCCUGG-GCcgugGCGGCCCCcccgucccgcggGGACGc -3'
miRNA:   3'- cGCGGACCuCG----UGCCGGGGca----------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 109892 0.69 0.501636
Target:  5'- gGCGCCccGGGGCuACaGCCCC-UGGACc -3'
miRNA:   3'- -CGCGGa-CCUCG-UGcCGGGGcAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 28772 0.69 0.491401
Target:  5'- gGCGCCUGGGccGCggcgcgggcgcucGCGGCCgCGgcggAGGCa -3'
miRNA:   3'- -CGCGGACCU--CG-------------UGCCGGgGCa---UCUGc -5'
23611 5' -60.9 NC_005261.1 + 105477 0.69 0.483099
Target:  5'- aGCuCCUcGGGGCGCgcgGGCCCCGagcccgccgAGACGa -3'
miRNA:   3'- -CGcGGA-CCUCGUG---CCGGGGCa--------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 127649 0.69 0.483099
Target:  5'- gGCGCCgggGGGcGCGCGGgUUCGgggcgGGACGg -3'
miRNA:   3'- -CGCGGa--CCU-CGUGCCgGGGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 21006 0.69 0.483099
Target:  5'- cGCGCCUugGGGGCGugacacCGaGCCCUGgGGGCGc -3'
miRNA:   3'- -CGCGGA--CCUCGU------GC-CGGGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 91447 0.69 0.483099
Target:  5'- cGCGCUgcgcGGCACGGCCCCGcccGCGc -3'
miRNA:   3'- -CGCGGacc-UCGUGCCGGGGCaucUGC- -5'
23611 5' -60.9 NC_005261.1 + 131623 0.7 0.477603
Target:  5'- cGCGCCUGGcGCccgccgcgaggaccgACgGGCCCCccGGGCGc -3'
miRNA:   3'- -CGCGGACCuCG---------------UG-CCGGGGcaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 83839 0.7 0.473956
Target:  5'- cCGCUggcGGGcCGCGGCCCCGcUGGGCu -3'
miRNA:   3'- cGCGGa--CCUcGUGCCGGGGC-AUCUGc -5'
23611 5' -60.9 NC_005261.1 + 130582 0.7 0.473956
Target:  5'- aGCGCCgcc-GCGCGGCCCCGcgccuGGCc -3'
miRNA:   3'- -CGCGGaccuCGUGCCGGGGCau---CUGc -5'
23611 5' -60.9 NC_005261.1 + 32194 0.7 0.464899
Target:  5'- cGCGCgCUGGAGCugGcGCCC----GACGa -3'
miRNA:   3'- -CGCG-GACCUCGugC-CGGGgcauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 4705 0.7 0.464899
Target:  5'- cGCGUCUuuGGCAuCGGCCCCGgagucGGCGg -3'
miRNA:   3'- -CGCGGAccUCGU-GCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 59416 0.7 0.455934
Target:  5'- gGCGCCggcgcUGucGCGCGGCCCgGcAGGCGc -3'
miRNA:   3'- -CGCGG-----ACcuCGUGCCGGGgCaUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.