Results 41 - 60 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23611 | 5' | -60.9 | NC_005261.1 | + | 30772 | 0.66 | 0.696822 |
Target: 5'- cGgGCC-GGAGCcCGGCCgCGgcGGugGa -3' miRNA: 3'- -CgCGGaCCUCGuGCCGGgGCa-UCugC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 30806 | 0.69 | 0.530002 |
Target: 5'- gGgGCCggaGGAGCugGGggggCCCGgGGACGg -3' miRNA: 3'- -CgCGGa--CCUCGugCCg---GGGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 31085 | 0.66 | 0.676259 |
Target: 5'- cGCGUgCUGG-GCcccaugccgcccgGCGGCCCCGccgccGACGg -3' miRNA: 3'- -CGCG-GACCuCG-------------UGCCGGGGCau---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 31363 | 0.7 | 0.438288 |
Target: 5'- -gGCCUGGAuGUcgcagaucGCGGaCCCCGaGGACGu -3' miRNA: 3'- cgCGGACCU-CG--------UGCC-GGGGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 31557 | 0.67 | 0.627822 |
Target: 5'- aCGCCUGG-GC-CGGgUCC-UGGACGg -3' miRNA: 3'- cGCGGACCuCGuGCCgGGGcAUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 32194 | 0.7 | 0.464899 |
Target: 5'- cGCGCgCUGGAGCugGcGCCC----GACGa -3' miRNA: 3'- -CGCG-GACCUCGugC-CGGGgcauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 32398 | 0.72 | 0.356345 |
Target: 5'- gGCGuCCcGGAGCGCGuGCCgccgCCGgcGACGg -3' miRNA: 3'- -CGC-GGaCCUCGUGC-CGG----GGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 32527 | 0.66 | 0.70654 |
Target: 5'- cGCGCCcGGccC-CGGCCCCGgccgcGGCGc -3' miRNA: 3'- -CGCGGaCCucGuGCCGGGGCau---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 33065 | 0.69 | 0.520477 |
Target: 5'- gGCGCC-GGGGaCGCGGCgCUGgcGGCc -3' miRNA: 3'- -CGCGGaCCUC-GUGCCGgGGCauCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 33605 | 0.68 | 0.588292 |
Target: 5'- gGCGCCggcgcgGGcGGCGgGGCCCgG-GGGCGc -3' miRNA: 3'- -CGCGGa-----CC-UCGUgCCGGGgCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 33774 | 0.68 | 0.588292 |
Target: 5'- gGgGCCcgcgGcGAGCGCugGGCCCCGcgcGGGCGg -3' miRNA: 3'- -CgCGGa---C-CUCGUG--CCGGGGCa--UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 33824 | 0.71 | 0.387807 |
Target: 5'- gGCgGCCggGGGGCGCgGGCCCCcuggcgcUGGGCGg -3' miRNA: 3'- -CG-CGGa-CCUCGUG-CCGGGGc------AUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 34236 | 0.67 | 0.596173 |
Target: 5'- cGCGgccgucaUCUGGGGCGaagacuacgacgcCGGgCCCGUAGACc -3' miRNA: 3'- -CGC-------GGACCUCGU-------------GCCgGGGCAUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 34452 | 0.77 | 0.161672 |
Target: 5'- cGCGCC-GGGGCACgggccgggGGCCCCGUAccugcGGCGg -3' miRNA: 3'- -CGCGGaCCUCGUG--------CCGGGGCAU-----CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 34609 | 0.66 | 0.70654 |
Target: 5'- -gGCCUGGccgacgcGCugGaGCCCCuGaUAGGCGa -3' miRNA: 3'- cgCGGACCu------CGugC-CGGGG-C-AUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 34917 | 0.67 | 0.647632 |
Target: 5'- -gGUC-GGGGCGCGGCCaCgCGggGGGCGg -3' miRNA: 3'- cgCGGaCCUCGUGCCGG-G-GCa-UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 35706 | 0.73 | 0.312609 |
Target: 5'- uGgGCCgGGGGCucggugGCGGCCCCGgccgAGGCc -3' miRNA: 3'- -CgCGGaCCUCG------UGCCGGGGCa---UCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 35814 | 0.69 | 0.511021 |
Target: 5'- -gGCCUGGAcCcCGGCCCCG-AGAg- -3' miRNA: 3'- cgCGGACCUcGuGCCGGGGCaUCUgc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 35908 | 0.7 | 0.433071 |
Target: 5'- cCGCCgcGGcAGCGCGGCCCCGcgccgcagcccagcGGGCGc -3' miRNA: 3'- cGCGGa-CC-UCGUGCCGGGGCa-------------UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 37177 | 0.67 | 0.598147 |
Target: 5'- uGCGCCUGGGcGCugcugGCGGCgCUGcuGGCGg -3' miRNA: 3'- -CGCGGACCU-CG-----UGCCGgGGCauCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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