miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 37988 0.68 0.588292
Target:  5'- uCGCgUGGAcGCgcuacGCGGCgCCCGaGGACGu -3'
miRNA:   3'- cGCGgACCU-CG-----UGCCG-GGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 38469 0.75 0.243264
Target:  5'- cGCGuuCCUGGAgcaGCACGGCCgCGgcGGCGu -3'
miRNA:   3'- -CGC--GGACCU---CGUGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 39377 0.78 0.146437
Target:  5'- gGCgGCCggGGAGgGCGGCCCUGgcGGCGa -3'
miRNA:   3'- -CG-CGGa-CCUCgUGCCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 39789 0.68 0.549236
Target:  5'- uCGCCggggGGcGGCGCGGCCgCCGgcgccAGGCu -3'
miRNA:   3'- cGCGGa---CC-UCGUGCCGG-GGCa----UCUGc -5'
23611 5' -60.9 NC_005261.1 + 40256 0.7 0.447063
Target:  5'- aGCGCCaUGGcggcggccgcGGCGgGGCUCaGUAGACGa -3'
miRNA:   3'- -CGCGG-ACC----------UCGUgCCGGGgCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 40678 0.68 0.578469
Target:  5'- aCGCCgucggGGAGC-CGGCgCCGgccGGGCu -3'
miRNA:   3'- cGCGGa----CCUCGuGCCGgGGCa--UCUGc -5'
23611 5' -60.9 NC_005261.1 + 41652 0.74 0.285784
Target:  5'- uGCGCgUGGAG-GCGGCUCaUGUAGGCGc -3'
miRNA:   3'- -CGCGgACCUCgUGCCGGG-GCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 43306 0.67 0.651591
Target:  5'- gGCGCC-GGcAGCcCGGCCagcuucgcccgguaCGUAGACu -3'
miRNA:   3'- -CGCGGaCC-UCGuGCCGGg-------------GCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 43352 0.72 0.348765
Target:  5'- uGUGCCUGGGGCugGuGCCgCUGc-GGCGg -3'
miRNA:   3'- -CGCGGACCUCGugC-CGG-GGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 43430 0.67 0.637729
Target:  5'- cCGCCggcggGGAGCuggcuCGGCgCC-UGGACGu -3'
miRNA:   3'- cGCGGa----CCUCGu----GCCGgGGcAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 43812 0.66 0.70654
Target:  5'- gGCGCC-GG-GCGCGcCCuCCGUGGAg- -3'
miRNA:   3'- -CGCGGaCCuCGUGCcGG-GGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 44674 0.66 0.716199
Target:  5'- cGCGCCUGGAGacguaccuCGCGGagCUCGc-GGCGa -3'
miRNA:   3'- -CGCGGACCUC--------GUGCCg-GGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 44732 0.67 0.637729
Target:  5'- gGCGCUgc-AGCugGGCCCCG-AGcuGCGc -3'
miRNA:   3'- -CGCGGaccUCGugCCGGGGCaUC--UGC- -5'
23611 5' -60.9 NC_005261.1 + 45644 0.66 0.70654
Target:  5'- cGCGCC-GGAGCAguGCCCaGcGGGCGu -3'
miRNA:   3'- -CGCGGaCCUCGUgcCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 46284 0.66 0.696822
Target:  5'- gGCGCuCUGGccgggcaacGGCGCGccgcaguaGCCCCGcgAGGCu -3'
miRNA:   3'- -CGCG-GACC---------UCGUGC--------CGGGGCa-UCUGc -5'
23611 5' -60.9 NC_005261.1 + 46382 0.66 0.687054
Target:  5'- uCGCuCUcGGcGC-CGGCCCCGUcgccGACGg -3'
miRNA:   3'- cGCG-GA-CCuCGuGCCGGGGCAu---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 46568 0.73 0.292316
Target:  5'- aGCGCugCUGcGAGCGCGGCCUCGcgcGACa -3'
miRNA:   3'- -CGCG--GAC-CUCGUGCCGGGGCau-CUGc -5'
23611 5' -60.9 NC_005261.1 + 51417 0.66 0.696822
Target:  5'- cGCGCCcaccgccuGCugGGCCCCG--GGCGc -3'
miRNA:   3'- -CGCGGaccu----CGugCCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 52357 0.68 0.565752
Target:  5'- cCGCC-GGAGCcggagcccgcggcgGCGGCCCCGgucgucaGGGCc -3'
miRNA:   3'- cGCGGaCCUCG--------------UGCCGGGGCa------UCUGc -5'
23611 5' -60.9 NC_005261.1 + 52965 0.66 0.677242
Target:  5'- aGCGCCgcgccGGUGCGGCgCCGgcAGGCGg -3'
miRNA:   3'- -CGCGGacc--UCGUGCCGgGGCa-UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.