miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 68593 0.68 0.53959
Target:  5'- cGgGCCgcgGGAGCGgGGCCgaCGgcGugGg -3'
miRNA:   3'- -CgCGGa--CCUCGUgCCGGg-GCauCugC- -5'
23611 5' -60.9 NC_005261.1 + 68824 0.69 0.507258
Target:  5'- aCGCCUGG-GCcgugGCGGCCCCcccgucccgcggGGACGc -3'
miRNA:   3'- cGCGGACCuCG----UGCCGGGGca----------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 69089 0.68 0.53959
Target:  5'- uCGCgCUGGGGCAUGGCCagCUGcuacgGGGCGc -3'
miRNA:   3'- cGCG-GACCUCGUGCCGG--GGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 69230 0.66 0.674292
Target:  5'- uGCGCgCUGGGGCGguucgccgaggcgcUGGCCCgCGccGACc -3'
miRNA:   3'- -CGCG-GACCUCGU--------------GCCGGG-GCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 69548 0.7 0.438288
Target:  5'- cGCGCgCUGGGGacgGCGGCCCCcuacGUcacccucauagAGGCGg -3'
miRNA:   3'- -CGCG-GACCUCg--UGCCGGGG----CA-----------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 69761 0.66 0.70654
Target:  5'- aGCGC--GGGGgGCGGCgCCGgGGACu -3'
miRNA:   3'- -CGCGgaCCUCgUGCCGgGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 70689 0.68 0.588292
Target:  5'- -aGCCaGGcguccAGCGCGGCCCgCGcGGGCa -3'
miRNA:   3'- cgCGGaCC-----UCGUGCCGGG-GCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 71213 0.66 0.667397
Target:  5'- uGCGCgaUGGuGCgcgcgcgcacGCGGCCCuCGgcGGCGc -3'
miRNA:   3'- -CGCGg-ACCuCG----------UGCCGGG-GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 71615 0.68 0.549236
Target:  5'- cGCgGCCcGG-GCGCGGgCCCGggcGGCGg -3'
miRNA:   3'- -CG-CGGaCCuCGUGCCgGGGCau-CUGC- -5'
23611 5' -60.9 NC_005261.1 + 71790 0.66 0.696822
Target:  5'- cGCaGCU--GAGCGCGGCccggCCCGUggGGACGu -3'
miRNA:   3'- -CG-CGGacCUCGUGCCG----GGGCA--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 73214 0.67 0.647632
Target:  5'- gGCGCCUcgaGGGGCGCGGUggCCGcgAGcGCGa -3'
miRNA:   3'- -CGCGGA---CCUCGUGCCGg-GGCa-UC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 74690 0.66 0.667397
Target:  5'- cGCGCg-GGAGC-UGGCCgCCGcgcGGGCGc -3'
miRNA:   3'- -CGCGgaCCUCGuGCCGG-GGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 75326 0.66 0.700716
Target:  5'- gGCGCgC-GGAGCccugugaccuucguCGGCCUCGUGGAg- -3'
miRNA:   3'- -CGCG-GaCCUCGu-------------GCCGGGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 75856 0.73 0.312609
Target:  5'- gGCGCCgacGGcGGCcccgACGGCgCCGUGGGCGc -3'
miRNA:   3'- -CGCGGa--CC-UCG----UGCCGgGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 76437 0.66 0.696822
Target:  5'- gGCGCCaUGGcGgACGcGCCCgaCGgcGACGg -3'
miRNA:   3'- -CGCGG-ACCuCgUGC-CGGG--GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 76653 0.75 0.249
Target:  5'- aGCGCCUGcGAGguCGGCgCCGUGcuggcccucgccGACGa -3'
miRNA:   3'- -CGCGGAC-CUCguGCCGgGGCAU------------CUGC- -5'
23611 5' -60.9 NC_005261.1 + 77031 0.66 0.667397
Target:  5'- aCGCCgaGGccgcgcGCGCGGCCCuCGgcGACc -3'
miRNA:   3'- cGCGGa-CCu-----CGUGCCGGG-GCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 78859 0.68 0.578469
Target:  5'- cCGCCgccGGAGCGCGaGCCgCGUcAGcCGg -3'
miRNA:   3'- cGCGGa--CCUCGUGC-CGGgGCA-UCuGC- -5'
23611 5' -60.9 NC_005261.1 + 79214 0.69 0.520477
Target:  5'- aUGCCUGacacggucgaGAGCGCGGCgCCCGc-GGCGc -3'
miRNA:   3'- cGCGGAC----------CUCGUGCCG-GGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 81175 0.74 0.276833
Target:  5'- uGCGCCcgagcucguacucGGGGCACGGCCgCGcGGGCGc -3'
miRNA:   3'- -CGCGGa------------CCUCGUGCCGGgGCaUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.