miRNA display CGI


Results 121 - 140 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 82214 0.69 0.530002
Target:  5'- cCGCCacguacacguUGaGcAGCACGuCCCCGUAGACGc -3'
miRNA:   3'- cGCGG----------AC-C-UCGUGCcGGGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 83382 0.76 0.196472
Target:  5'- aGCGCg-GcGAGCGCGGCCUCGgccgAGGCGa -3'
miRNA:   3'- -CGCGgaC-CUCGUGCCGGGGCa---UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 83673 0.74 0.26688
Target:  5'- cGCGCCUGG-GCGCGcagcgcGCCgCCG-AGGCGg -3'
miRNA:   3'- -CGCGGACCuCGUGC------CGG-GGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 83839 0.7 0.473956
Target:  5'- cCGCUggcGGGcCGCGGCCCCGcUGGGCu -3'
miRNA:   3'- cGCGGa--CCUcGUGCCGGGGC-AUCUGc -5'
23611 5' -60.9 NC_005261.1 + 84282 0.71 0.404208
Target:  5'- gGUGCCgccGGcGGCccCGGCCCCGgcGGCGc -3'
miRNA:   3'- -CGCGGa--CC-UCGu-GCCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 84562 1.11 0.000765
Target:  5'- aGCGCCUGGAGCACGGCCCCGUAGACGg -3'
miRNA:   3'- -CGCGGACCUCGUGCCGGGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 87105 0.67 0.627822
Target:  5'- cGCGCa--GAGCGCGGCgUUGUAGAa- -3'
miRNA:   3'- -CGCGgacCUCGUGCCGgGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 87936 0.75 0.232122
Target:  5'- gGgGCCUGGAGCcgcgcgccgccACGGCCCgcCGgcGGCGg -3'
miRNA:   3'- -CgCGGACCUCG-----------UGCCGGG--GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 88141 0.68 0.53959
Target:  5'- cGCGCCgcgcgGGGGCGCcccGGCCgcgcagCCGggccgGGGCGa -3'
miRNA:   3'- -CGCGGa----CCUCGUG---CCGG------GGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 90656 0.71 0.387807
Target:  5'- cUGCCUGGccGuCGCGGCCaCCGU-GACGa -3'
miRNA:   3'- cGCGGACCu-C-GUGCCGG-GGCAuCUGC- -5'
23611 5' -60.9 NC_005261.1 + 90740 0.68 0.568681
Target:  5'- cGCGCCUGaGgcgcuGGCGCGGgacuuCCCCG-AGGCc -3'
miRNA:   3'- -CGCGGAC-C-----UCGUGCC-----GGGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 90881 0.66 0.677242
Target:  5'- uGCGCgCUGGgcgacggcauGGCGCGGCagguCUCGgcGGCGc -3'
miRNA:   3'- -CGCG-GACC----------UCGUGCCG----GGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 91447 0.69 0.483099
Target:  5'- cGCGCUgcgcGGCACGGCCCCGcccGCGc -3'
miRNA:   3'- -CGCGGacc-UCGUGCCGGGGCaucUGC- -5'
23611 5' -60.9 NC_005261.1 + 92313 0.67 0.627822
Target:  5'- aGCGCCgcgcGGuccGCGCGGCCcauCCGcGGGCc -3'
miRNA:   3'- -CGCGGa---CCu--CGUGCCGG---GGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 93905 0.73 0.305728
Target:  5'- aGCGaCUGcGGGCGCGGCgCCCGcGGGCu -3'
miRNA:   3'- -CGCgGAC-CUCGUGCCG-GGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 94847 0.77 0.185395
Target:  5'- cGCGCCUGGccucggcgcucgcGCACGGCCCgGgcGGGCGg -3'
miRNA:   3'- -CGCGGACCu------------CGUGCCGGGgCa-UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 95638 0.67 0.598147
Target:  5'- aGCGgCUGGGcgagcgcgacGCGCGGCgCCGc-GACGg -3'
miRNA:   3'- -CGCgGACCU----------CGUGCCGgGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 95808 0.74 0.260807
Target:  5'- gGCGCCggcgGGGGCucgcgguccucGCGGCgCuuGUGGGCGg -3'
miRNA:   3'- -CGCGGa---CCUCG-----------UGCCG-GggCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 97088 0.66 0.716199
Target:  5'- gGCGCCggcugggccgGGGGCGCcagccgGGCCgCGgccggAGGCGc -3'
miRNA:   3'- -CGCGGa---------CCUCGUG------CCGGgGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 98287 0.68 0.53959
Target:  5'- aCGCCcGGcGCguccGCGGCCUCGgGGGCGg -3'
miRNA:   3'- cGCGGaCCuCG----UGCCGGGGCaUCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.