miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 109321 0.67 0.647632
Target:  5'- -gGCCUccGcGAGCGCGGCCgCGgggucGGCGg -3'
miRNA:   3'- cgCGGA--C-CUCGUGCCGGgGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 109234 0.7 0.447063
Target:  5'- cGCGCgCUGcAGCGCGGCCCaGUgcgGGGCc -3'
miRNA:   3'- -CGCG-GACcUCGUGCCGGGgCA---UCUGc -5'
23611 5' -60.9 NC_005261.1 + 109190 0.71 0.412571
Target:  5'- aGCGCCgcgucgGGcguGCGCaGGCgCUCGUAGGCGc -3'
miRNA:   3'- -CGCGGa-----CCu--CGUG-CCG-GGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 108419 0.68 0.568681
Target:  5'- cGCGCCUGcGuGCACGGCaaccgcguCCCGgccgAGcaGCGc -3'
miRNA:   3'- -CGCGGAC-CuCGUGCCG--------GGGCa---UC--UGC- -5'
23611 5' -60.9 NC_005261.1 + 108172 0.69 0.530002
Target:  5'- cCGCCaGGGcGCGCGGCCgCGgcuccGGGCGc -3'
miRNA:   3'- cGCGGaCCU-CGUGCCGGgGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 105613 0.66 0.70654
Target:  5'- aCGCCUGcGGCACGuccccGCuCCCGUgcgggucaaAGACGu -3'
miRNA:   3'- cGCGGACcUCGUGC-----CG-GGGCA---------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 105477 0.69 0.483099
Target:  5'- aGCuCCUcGGGGCGCgcgGGCCCCGagcccgccgAGACGa -3'
miRNA:   3'- -CGcGGA-CCUCGUG---CCGGGGCa--------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 104686 0.76 0.196472
Target:  5'- aGCGCCUGGGcCACcGCCCCGaagagcggcUGGACGg -3'
miRNA:   3'- -CGCGGACCUcGUGcCGGGGC---------AUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 103055 0.66 0.687054
Target:  5'- aGCGCCUGucccGGCACGGCgCCCa------ -3'
miRNA:   3'- -CGCGGACc---UCGUGCCG-GGGcaucugc -5'
23611 5' -60.9 NC_005261.1 + 102504 0.66 0.696822
Target:  5'- aGCGCCUGGGccuuGCGCaGGUCCgCGU--GCa -3'
miRNA:   3'- -CGCGGACCU----CGUG-CCGGG-GCAucUGc -5'
23611 5' -60.9 NC_005261.1 + 101093 0.68 0.568681
Target:  5'- cCGCCUGcAGCGCGGCCgCGcgcgccuuGGCGc -3'
miRNA:   3'- cGCGGACcUCGUGCCGGgGCau------CUGC- -5'
23611 5' -60.9 NC_005261.1 + 100950 0.66 0.687054
Target:  5'- cGCGUCcacGGcgcGCGCGGUCUCGUGGAa- -3'
miRNA:   3'- -CGCGGa--CCu--CGUGCCGGGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 100012 0.71 0.412571
Target:  5'- gGCGCCcauGAGCGCGGCCacgacaagguCCGcGGGCGu -3'
miRNA:   3'- -CGCGGac-CUCGUGCCGG----------GGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 98726 0.68 0.549236
Target:  5'- -gGCCUugGGGGCacGCGGCCgCGcGGGCGu -3'
miRNA:   3'- cgCGGA--CCUCG--UGCCGGgGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 98317 0.67 0.617918
Target:  5'- gGCGCCgccgccagcGGcGGCGC-GCCCCGUGucGACGc -3'
miRNA:   3'- -CGCGGa--------CC-UCGUGcCGGGGCAU--CUGC- -5'
23611 5' -60.9 NC_005261.1 + 98287 0.68 0.53959
Target:  5'- aCGCCcGGcGCguccGCGGCCUCGgGGGCGg -3'
miRNA:   3'- cGCGGaCCuCG----UGCCGGGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 97088 0.66 0.716199
Target:  5'- gGCGCCggcugggccgGGGGCGCcagccgGGCCgCGgccggAGGCGc -3'
miRNA:   3'- -CGCGGa---------CCUCGUG------CCGGgGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 95808 0.74 0.260807
Target:  5'- gGCGCCggcgGGGGCucgcgguccucGCGGCgCuuGUGGGCGg -3'
miRNA:   3'- -CGCGGa---CCUCG-----------UGCCG-GggCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 95638 0.67 0.598147
Target:  5'- aGCGgCUGGGcgagcgcgacGCGCGGCgCCGc-GACGg -3'
miRNA:   3'- -CGCgGACCU----------CGUGCCGgGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 94847 0.77 0.185395
Target:  5'- cGCGCCUGGccucggcgcucgcGCACGGCCCgGgcGGGCGg -3'
miRNA:   3'- -CGCGGACCu------------CGUGCCGGGgCa-UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.