Results 81 - 100 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23611 | 5' | -60.9 | NC_005261.1 | + | 76437 | 0.66 | 0.696822 |
Target: 5'- gGCGCCaUGGcGgACGcGCCCgaCGgcGACGg -3' miRNA: 3'- -CGCGG-ACCuCgUGC-CGGG--GCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 75856 | 0.73 | 0.312609 |
Target: 5'- gGCGCCgacGGcGGCcccgACGGCgCCGUGGGCGc -3' miRNA: 3'- -CGCGGa--CC-UCG----UGCCGgGGCAUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 75326 | 0.66 | 0.700716 |
Target: 5'- gGCGCgC-GGAGCccugugaccuucguCGGCCUCGUGGAg- -3' miRNA: 3'- -CGCG-GaCCUCGu-------------GCCGGGGCAUCUgc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 74690 | 0.66 | 0.667397 |
Target: 5'- cGCGCg-GGAGC-UGGCCgCCGcgcGGGCGc -3' miRNA: 3'- -CGCGgaCCUCGuGCCGG-GGCa--UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 73214 | 0.67 | 0.647632 |
Target: 5'- gGCGCCUcgaGGGGCGCGGUggCCGcgAGcGCGa -3' miRNA: 3'- -CGCGGA---CCUCGUGCCGg-GGCa-UC-UGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 71790 | 0.66 | 0.696822 |
Target: 5'- cGCaGCU--GAGCGCGGCccggCCCGUggGGACGu -3' miRNA: 3'- -CG-CGGacCUCGUGCCG----GGGCA--UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 71615 | 0.68 | 0.549236 |
Target: 5'- cGCgGCCcGG-GCGCGGgCCCGggcGGCGg -3' miRNA: 3'- -CG-CGGaCCuCGUGCCgGGGCau-CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 71213 | 0.66 | 0.667397 |
Target: 5'- uGCGCgaUGGuGCgcgcgcgcacGCGGCCCuCGgcGGCGc -3' miRNA: 3'- -CGCGg-ACCuCG----------UGCCGGG-GCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 70689 | 0.68 | 0.588292 |
Target: 5'- -aGCCaGGcguccAGCGCGGCCCgCGcGGGCa -3' miRNA: 3'- cgCGGaCC-----UCGUGCCGGG-GCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 69761 | 0.66 | 0.70654 |
Target: 5'- aGCGC--GGGGgGCGGCgCCGgGGACu -3' miRNA: 3'- -CGCGgaCCUCgUGCCGgGGCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 69548 | 0.7 | 0.438288 |
Target: 5'- cGCGCgCUGGGGacgGCGGCCCCcuacGUcacccucauagAGGCGg -3' miRNA: 3'- -CGCG-GACCUCg--UGCCGGGG----CA-----------UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 69230 | 0.66 | 0.674292 |
Target: 5'- uGCGCgCUGGGGCGguucgccgaggcgcUGGCCCgCGccGACc -3' miRNA: 3'- -CGCG-GACCUCGU--------------GCCGGG-GCauCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 69089 | 0.68 | 0.53959 |
Target: 5'- uCGCgCUGGGGCAUGGCCagCUGcuacgGGGCGc -3' miRNA: 3'- cGCG-GACCUCGUGCCGG--GGCa----UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 68824 | 0.69 | 0.507258 |
Target: 5'- aCGCCUGG-GCcgugGCGGCCCCcccgucccgcggGGACGc -3' miRNA: 3'- cGCGGACCuCG----UGCCGGGGca----------UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 68593 | 0.68 | 0.53959 |
Target: 5'- cGgGCCgcgGGAGCGgGGCCgaCGgcGugGg -3' miRNA: 3'- -CgCGGa--CCUCGUgCCGGg-GCauCugC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 68269 | 0.73 | 0.298294 |
Target: 5'- cGCGCCUGcGcccgcgcGGCGgGGCCCCGgccgcGGGCGc -3' miRNA: 3'- -CGCGGAC-C-------UCGUgCCGGGGCa----UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 66299 | 0.74 | 0.273067 |
Target: 5'- uGCGUCaGGcgcGGCACGGCCaCCG-AGGCGg -3' miRNA: 3'- -CGCGGaCC---UCGUGCCGG-GGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 65508 | 0.66 | 0.661476 |
Target: 5'- gGCGUCaUGGcgcacuccaucacccAGCGCGGCCgCGcGGGCa -3' miRNA: 3'- -CGCGG-ACC---------------UCGUGCCGGgGCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 63016 | 0.68 | 0.568681 |
Target: 5'- cGCGCCcgcGcGGGCGcCGGCgCCCGcggcgAGGCGg -3' miRNA: 3'- -CGCGGa--C-CUCGU-GCCG-GGGCa----UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 62558 | 0.66 | 0.70654 |
Target: 5'- gGCGCCgccAGCAUGcGCCCCGgcGccACGc -3' miRNA: 3'- -CGCGGaccUCGUGC-CGGGGCauC--UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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