miRNA display CGI


Results 101 - 120 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 62378 0.71 0.395953
Target:  5'- cGCGCCUGcGGCAgCGGCaCCGUcGugGg -3'
miRNA:   3'- -CGCGGACcUCGU-GCCGgGGCAuCugC- -5'
23611 5' -60.9 NC_005261.1 + 62299 0.67 0.647632
Target:  5'- gGCGCCgcgcgGGcGCgcgGCGGCCCCGcGGuCc -3'
miRNA:   3'- -CGCGGa----CCuCG---UGCCGGGGCaUCuGc -5'
23611 5' -60.9 NC_005261.1 + 62207 0.68 0.53959
Target:  5'- aGCGCgaGGGugcGCGCGGCCgCGUcuGCGc -3'
miRNA:   3'- -CGCGgaCCU---CGUGCCGGgGCAucUGC- -5'
23611 5' -60.9 NC_005261.1 + 61446 0.73 0.305728
Target:  5'- uGCGCCUGcAG-ACGGaCCCCGUGGAg- -3'
miRNA:   3'- -CGCGGACcUCgUGCC-GGGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 60361 0.66 0.716199
Target:  5'- cGCGCCaGGcAGUGCuuGGUCUCGUuGGCGa -3'
miRNA:   3'- -CGCGGaCC-UCGUG--CCGGGGCAuCUGC- -5'
23611 5' -60.9 NC_005261.1 + 60278 0.68 0.568681
Target:  5'- gGCGCCcGGGGUccgcccccGCGGCCCgcaggcaguCGgcugAGACGa -3'
miRNA:   3'- -CGCGGaCCUCG--------UGCCGGG---------GCa---UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 59521 0.66 0.696822
Target:  5'- cGCGcCCUGGAGCA--GCCCCGccGcCa -3'
miRNA:   3'- -CGC-GGACCUCGUgcCGGGGCauCuGc -5'
23611 5' -60.9 NC_005261.1 + 59480 0.66 0.70654
Target:  5'- aGCGCC---GGCGCGGCCgCCGcgccagcGGCGg -3'
miRNA:   3'- -CGCGGaccUCGUGCCGG-GGCau-----CUGC- -5'
23611 5' -60.9 NC_005261.1 + 59416 0.7 0.455934
Target:  5'- gGCGCCggcgcUGucGCGCGGCCCgGcAGGCGc -3'
miRNA:   3'- -CGCGG-----ACcuCGUGCCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 59150 0.66 0.70654
Target:  5'- cGCGCCccgGGcGCGCGGCgCCCGc----- -3'
miRNA:   3'- -CGCGGa--CCuCGUGCCG-GGGCaucugc -5'
23611 5' -60.9 NC_005261.1 + 58216 0.66 0.687054
Target:  5'- cGCGCCaGcAGCGC-GCCCgCGgcGGCGg -3'
miRNA:   3'- -CGCGGaCcUCGUGcCGGG-GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 58036 0.71 0.42104
Target:  5'- aGCuCCagGGAGCGCGGCCgCGU-GAUGu -3'
miRNA:   3'- -CGcGGa-CCUCGUGCCGGgGCAuCUGC- -5'
23611 5' -60.9 NC_005261.1 + 57649 0.66 0.657524
Target:  5'- cCGCCc-GAGCACGcCCCCG-AGACu -3'
miRNA:   3'- cGCGGacCUCGUGCcGGGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 56127 0.68 0.578469
Target:  5'- cGCGCCgcagggcggGGGGCGCGGgCCgaGgguGGCGg -3'
miRNA:   3'- -CGCGGa--------CCUCGUGCCgGGg-Cau-CUGC- -5'
23611 5' -60.9 NC_005261.1 + 55057 0.66 0.687054
Target:  5'- gGgGCCgGcGAGCuCGGCCgCCGaAGGCa -3'
miRNA:   3'- -CgCGGaC-CUCGuGCCGG-GGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 52965 0.66 0.677242
Target:  5'- aGCGCCgcgccGGUGCGGCgCCGgcAGGCGg -3'
miRNA:   3'- -CGCGGacc--UCGUGCCGgGGCa-UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 52357 0.68 0.565752
Target:  5'- cCGCC-GGAGCcggagcccgcggcgGCGGCCCCGgucgucaGGGCc -3'
miRNA:   3'- cGCGGaCCUCG--------------UGCCGGGGCa------UCUGc -5'
23611 5' -60.9 NC_005261.1 + 51417 0.66 0.696822
Target:  5'- cGCGCCcaccgccuGCugGGCCCCG--GGCGc -3'
miRNA:   3'- -CGCGGaccu----CGugCCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 46568 0.73 0.292316
Target:  5'- aGCGCugCUGcGAGCGCGGCCUCGcgcGACa -3'
miRNA:   3'- -CGCG--GAC-CUCGUGCCGGGGCau-CUGc -5'
23611 5' -60.9 NC_005261.1 + 46382 0.66 0.687054
Target:  5'- uCGCuCUcGGcGC-CGGCCCCGUcgccGACGg -3'
miRNA:   3'- cGCG-GA-CCuCGuGCCGGGGCAu---CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.