miRNA display CGI


Results 141 - 160 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 34609 0.66 0.70654
Target:  5'- -gGCCUGGccgacgcGCugGaGCCCCuGaUAGGCGa -3'
miRNA:   3'- cgCGGACCu------CGugC-CGGGG-C-AUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 34452 0.77 0.161672
Target:  5'- cGCGCC-GGGGCACgggccgggGGCCCCGUAccugcGGCGg -3'
miRNA:   3'- -CGCGGaCCUCGUG--------CCGGGGCAU-----CUGC- -5'
23611 5' -60.9 NC_005261.1 + 34236 0.67 0.596173
Target:  5'- cGCGgccgucaUCUGGGGCGaagacuacgacgcCGGgCCCGUAGACc -3'
miRNA:   3'- -CGC-------GGACCUCGU-------------GCCgGGGCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 33824 0.71 0.387807
Target:  5'- gGCgGCCggGGGGCGCgGGCCCCcuggcgcUGGGCGg -3'
miRNA:   3'- -CG-CGGa-CCUCGUG-CCGGGGc------AUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33774 0.68 0.588292
Target:  5'- gGgGCCcgcgGcGAGCGCugGGCCCCGcgcGGGCGg -3'
miRNA:   3'- -CgCGGa---C-CUCGUG--CCGGGGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33605 0.68 0.588292
Target:  5'- gGCGCCggcgcgGGcGGCGgGGCCCgG-GGGCGc -3'
miRNA:   3'- -CGCGGa-----CC-UCGUgCCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 33065 0.69 0.520477
Target:  5'- gGCGCC-GGGGaCGCGGCgCUGgcGGCc -3'
miRNA:   3'- -CGCGGaCCUC-GUGCCGgGGCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 32527 0.66 0.70654
Target:  5'- cGCGCCcGGccC-CGGCCCCGgccgcGGCGc -3'
miRNA:   3'- -CGCGGaCCucGuGCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 32398 0.72 0.356345
Target:  5'- gGCGuCCcGGAGCGCGuGCCgccgCCGgcGACGg -3'
miRNA:   3'- -CGC-GGaCCUCGUGC-CGG----GGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 32194 0.7 0.464899
Target:  5'- cGCGCgCUGGAGCugGcGCCC----GACGa -3'
miRNA:   3'- -CGCG-GACCUCGugC-CGGGgcauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 31557 0.67 0.627822
Target:  5'- aCGCCUGG-GC-CGGgUCC-UGGACGg -3'
miRNA:   3'- cGCGGACCuCGuGCCgGGGcAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 31363 0.7 0.438288
Target:  5'- -gGCCUGGAuGUcgcagaucGCGGaCCCCGaGGACGu -3'
miRNA:   3'- cgCGGACCU-CG--------UGCC-GGGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 31085 0.66 0.676259
Target:  5'- cGCGUgCUGG-GCcccaugccgcccgGCGGCCCCGccgccGACGg -3'
miRNA:   3'- -CGCG-GACCuCG-------------UGCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 30806 0.69 0.530002
Target:  5'- gGgGCCggaGGAGCugGGggggCCCGgGGACGg -3'
miRNA:   3'- -CgCGGa--CCUCGugCCg---GGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 30772 0.66 0.696822
Target:  5'- cGgGCC-GGAGCcCGGCCgCGgcGGugGa -3'
miRNA:   3'- -CgCGGaCCUCGuGCCGGgGCa-UCugC- -5'
23611 5' -60.9 NC_005261.1 + 30337 0.68 0.567704
Target:  5'- cGCGgCUGGcGGCcgcgcucGCGGCCCUGaAGGCc -3'
miRNA:   3'- -CGCgGACC-UCG-------UGCCGGGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 30217 0.66 0.695848
Target:  5'- cCGCgCUGGcGGCGCgaaccguGGCCCCGcUGGcGCGg -3'
miRNA:   3'- cGCG-GACC-UCGUG-------CCGGGGC-AUC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 30086 0.66 0.677242
Target:  5'- gGCGCacccGGAGCGCGuGCUCCG--GGCa -3'
miRNA:   3'- -CGCGga--CCUCGUGC-CGGGGCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 29131 0.67 0.627822
Target:  5'- gGCGCC-GGGGgGC-GCCCCGccGGACc -3'
miRNA:   3'- -CGCGGaCCUCgUGcCGGGGCa-UCUGc -5'
23611 5' -60.9 NC_005261.1 + 28772 0.69 0.491401
Target:  5'- gGCGCCUGGGccGCggcgcgggcgcucGCGGCCgCGgcggAGGCa -3'
miRNA:   3'- -CGCGGACCU--CG-------------UGCCGGgGCa---UCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.