Results 41 - 60 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23611 | 5' | -60.9 | NC_005261.1 | + | 59150 | 0.66 | 0.70654 |
Target: 5'- cGCGCCccgGGcGCGCGGCgCCCGc----- -3' miRNA: 3'- -CGCGGa--CCuCGUGCCG-GGGCaucugc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 2995 | 0.66 | 0.716199 |
Target: 5'- -gGCCUGGcGGCcCGGCgCCG-GGGCu -3' miRNA: 3'- cgCGGACC-UCGuGCCGgGGCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 23276 | 0.66 | 0.716199 |
Target: 5'- aGCGCCUcccAGCACGcGUCC-GUGGGCa -3' miRNA: 3'- -CGCGGAcc-UCGUGC-CGGGgCAUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 97088 | 0.66 | 0.716199 |
Target: 5'- gGCGCCggcugggccgGGGGCGCcagccgGGCCgCGgccggAGGCGc -3' miRNA: 3'- -CGCGGa---------CCUCGUG------CCGGgGCa----UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 44674 | 0.66 | 0.716199 |
Target: 5'- cGCGCCUGGAGacguaccuCGCGGagCUCGc-GGCGa -3' miRNA: 3'- -CGCGGACCUC--------GUGCCg-GGGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 11901 | 0.66 | 0.70654 |
Target: 5'- cGCGCCcgccGcGGGCcCGGCCCgGccGGCGg -3' miRNA: 3'- -CGCGGa---C-CUCGuGCCGGGgCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 127346 | 0.66 | 0.70654 |
Target: 5'- aGCGgCgGGGcGCugGGCCCgCGUGG-Cu -3' miRNA: 3'- -CGCgGaCCU-CGugCCGGG-GCAUCuGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 46284 | 0.66 | 0.696822 |
Target: 5'- gGCGCuCUGGccgggcaacGGCGCGccgcaguaGCCCCGcgAGGCu -3' miRNA: 3'- -CGCG-GACC---------UCGUGC--------CGGGGCa-UCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 59521 | 0.66 | 0.696822 |
Target: 5'- cGCGcCCUGGAGCA--GCCCCGccGcCa -3' miRNA: 3'- -CGC-GGACCUCGUgcCGGGGCauCuGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 71790 | 0.66 | 0.696822 |
Target: 5'- cGCaGCU--GAGCGCGGCccggCCCGUggGGACGu -3' miRNA: 3'- -CG-CGGacCUCGUGCCG----GGGCA--UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 76437 | 0.66 | 0.696822 |
Target: 5'- gGCGCCaUGGcGgACGcGCCCgaCGgcGACGg -3' miRNA: 3'- -CGCGG-ACCuCgUGC-CGGG--GCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 102504 | 0.66 | 0.696822 |
Target: 5'- aGCGCCUGGGccuuGCGCaGGUCCgCGU--GCa -3' miRNA: 3'- -CGCGGACCU----CGUG-CCGGG-GCAucUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 30772 | 0.66 | 0.696822 |
Target: 5'- cGgGCC-GGAGCcCGGCCgCGgcGGugGa -3' miRNA: 3'- -CgCGGaCCUCGuGCCGGgGCa-UCugC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 51417 | 0.66 | 0.696822 |
Target: 5'- cGCGCCcaccgccuGCugGGCCCCG--GGCGc -3' miRNA: 3'- -CGCGGaccu----CGugCCGGGGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 130177 | 0.66 | 0.696822 |
Target: 5'- gGCGCCggcagcagGGAGCugACGGCcaccaccgccuCCUGcAGGCGg -3' miRNA: 3'- -CGCGGa-------CCUCG--UGCCG-----------GGGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 75326 | 0.66 | 0.700716 |
Target: 5'- gGCGCgC-GGAGCccugugaccuucguCGGCCUCGUGGAg- -3' miRNA: 3'- -CGCG-GaCCUCGu-------------GCCGGGGCAUCUgc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 9987 | 0.66 | 0.705571 |
Target: 5'- cGCGCCUcG-GCGCGGCcacccgcuugccaCCCGaccGGGCGg -3' miRNA: 3'- -CGCGGAcCuCGUGCCG-------------GGGCa--UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 19942 | 0.66 | 0.70654 |
Target: 5'- aGCGuCCUGGgcggggguGGgGCGGCCUCGgcuGCGg -3' miRNA: 3'- -CGC-GGACC--------UCgUGCCGGGGCaucUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 34609 | 0.66 | 0.70654 |
Target: 5'- -gGCCUGGccgacgcGCugGaGCCCCuGaUAGGCGa -3' miRNA: 3'- cgCGGACCu------CGugC-CGGGG-C-AUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 69761 | 0.66 | 0.70654 |
Target: 5'- aGCGC--GGGGgGCGGCgCCGgGGACu -3' miRNA: 3'- -CGCGgaCCUCgUGCCGgGGCaUCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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