Results 81 - 100 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23611 | 5' | -60.9 | NC_005261.1 | + | 90881 | 0.66 | 0.677242 |
Target: 5'- uGCGCgCUGGgcgacggcauGGCGCGGCagguCUCGgcGGCGc -3' miRNA: 3'- -CGCG-GACC----------UCGUGCCG----GGGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 52965 | 0.66 | 0.677242 |
Target: 5'- aGCGCCgcgccGGUGCGGCgCCGgcAGGCGg -3' miRNA: 3'- -CGCGGacc--UCGUGCCGgGGCa-UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 31085 | 0.66 | 0.676259 |
Target: 5'- cGCGUgCUGG-GCcccaugccgcccgGCGGCCCCGccgccGACGg -3' miRNA: 3'- -CGCG-GACCuCG-------------UGCCGGGGCau---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 69230 | 0.66 | 0.674292 |
Target: 5'- uGCGCgCUGGGGCGguucgccgaggcgcUGGCCCgCGccGACc -3' miRNA: 3'- -CGCG-GACCUCGU--------------GCCGGG-GCauCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 77031 | 0.66 | 0.667397 |
Target: 5'- aCGCCgaGGccgcgcGCGCGGCCCuCGgcGACc -3' miRNA: 3'- cGCGGa-CCu-----CGUGCCGGG-GCauCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 132549 | 0.66 | 0.667397 |
Target: 5'- cGCGCgaGGgcgaggcgcAGUACGGCUgCGaAGACGu -3' miRNA: 3'- -CGCGgaCC---------UCGUGCCGGgGCaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 74690 | 0.66 | 0.667397 |
Target: 5'- cGCGCg-GGAGC-UGGCCgCCGcgcGGGCGc -3' miRNA: 3'- -CGCGgaCCUCGuGCCGG-GGCa--UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 46382 | 0.66 | 0.687054 |
Target: 5'- uCGCuCUcGGcGC-CGGCCCCGUcgccGACGg -3' miRNA: 3'- cGCG-GA-CCuCGuGCCGGGGCAu---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 55057 | 0.66 | 0.687054 |
Target: 5'- gGgGCCgGcGAGCuCGGCCgCCGaAGGCa -3' miRNA: 3'- -CgCGGaC-CUCGuGCCGG-GGCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 103055 | 0.66 | 0.687054 |
Target: 5'- aGCGCCUGucccGGCACGGCgCCCa------ -3' miRNA: 3'- -CGCGGACc---UCGUGCCG-GGGcaucugc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 71790 | 0.66 | 0.696822 |
Target: 5'- cGCaGCU--GAGCGCGGCccggCCCGUggGGACGu -3' miRNA: 3'- -CG-CGGacCUCGUGCCG----GGGCA--UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 59521 | 0.66 | 0.696822 |
Target: 5'- cGCGcCCUGGAGCA--GCCCCGccGcCa -3' miRNA: 3'- -CGC-GGACCUCGUgcCGGGGCauCuGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 46284 | 0.66 | 0.696822 |
Target: 5'- gGCGCuCUGGccgggcaacGGCGCGccgcaguaGCCCCGcgAGGCu -3' miRNA: 3'- -CGCG-GACC---------UCGUGC--------CGGGGCa-UCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 13460 | 0.66 | 0.696822 |
Target: 5'- gGCGCCUcGGGguggaagauGCAC-GUCUCGUAGAUGc -3' miRNA: 3'- -CGCGGA-CCU---------CGUGcCGGGGCAUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 30217 | 0.66 | 0.695848 |
Target: 5'- cCGCgCUGGcGGCGCgaaccguGGCCCCGcUGGcGCGg -3' miRNA: 3'- cGCG-GACC-UCGUG-------CCGGGGC-AUC-UGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 1808 | 0.66 | 0.693896 |
Target: 5'- gGCGCCccGGGGUagagccgcgcguaaGCGGCCUCGgcGcGCGc -3' miRNA: 3'- -CGCGGa-CCUCG--------------UGCCGGGGCauC-UGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 117676 | 0.66 | 0.690967 |
Target: 5'- cGCGCCcGGccgggcccgcggcgaGGC-CGGCCCUG-AGGCc -3' miRNA: 3'- -CGCGGaCC---------------UCGuGCCGGGGCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 100950 | 0.66 | 0.687054 |
Target: 5'- cGCGUCcacGGcgcGCGCGGUCUCGUGGAa- -3' miRNA: 3'- -CGCGGa--CCu--CGUGCCGGGGCAUCUgc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 134250 | 0.66 | 0.687054 |
Target: 5'- cGCGCCcu--GCGCGGCCgCGUAcccGAUGu -3' miRNA: 3'- -CGCGGaccuCGUGCCGGgGCAU---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 58216 | 0.66 | 0.687054 |
Target: 5'- cGCGCCaGcAGCGC-GCCCgCGgcGGCGg -3' miRNA: 3'- -CGCGGaCcUCGUGcCGGG-GCauCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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