Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23611 | 5' | -60.9 | NC_005261.1 | + | 57649 | 0.66 | 0.657524 |
Target: 5'- cCGCCc-GAGCACGcCCCCG-AGACu -3' miRNA: 3'- cGCGGacCUCGUGCcGGGGCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 43306 | 0.67 | 0.651591 |
Target: 5'- gGCGCC-GGcAGCcCGGCCagcuucgcccgguaCGUAGACu -3' miRNA: 3'- -CGCGGaCC-UCGuGCCGGg-------------GCAUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 133375 | 0.67 | 0.647632 |
Target: 5'- gGCuGCCUGc-GCGCGGCCCac-GGGCGc -3' miRNA: 3'- -CG-CGGACcuCGUGCCGGGgcaUCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 109321 | 0.67 | 0.647632 |
Target: 5'- -gGCCUccGcGAGCGCGGCCgCGgggucGGCGg -3' miRNA: 3'- cgCGGA--C-CUCGUGCCGGgGCau---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 3917 | 0.67 | 0.647632 |
Target: 5'- cGCGCCgccGGcGC-CGGCCUCcggGUAGGCc -3' miRNA: 3'- -CGCGGa--CCuCGuGCCGGGG---CAUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 69230 | 0.66 | 0.674292 |
Target: 5'- uGCGCgCUGGGGCGguucgccgaggcgcUGGCCCgCGccGACc -3' miRNA: 3'- -CGCG-GACCUCGU--------------GCCGGG-GCauCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 31085 | 0.66 | 0.676259 |
Target: 5'- cGCGUgCUGG-GCcccaugccgcccgGCGGCCCCGccgccGACGg -3' miRNA: 3'- -CGCG-GACCuCG-------------UGCCGGGGCau---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 1808 | 0.66 | 0.693896 |
Target: 5'- gGCGCCccGGGGUagagccgcgcguaaGCGGCCUCGgcGcGCGc -3' miRNA: 3'- -CGCGGa-CCUCG--------------UGCCGGGGCauC-UGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 117676 | 0.66 | 0.690967 |
Target: 5'- cGCGCCcGGccgggcccgcggcgaGGC-CGGCCCUG-AGGCc -3' miRNA: 3'- -CGCGGaCC---------------UCGuGCCGGGGCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 100950 | 0.66 | 0.687054 |
Target: 5'- cGCGUCcacGGcgcGCGCGGUCUCGUGGAa- -3' miRNA: 3'- -CGCGGa--CCu--CGUGCCGGGGCAUCUgc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 134250 | 0.66 | 0.687054 |
Target: 5'- cGCGCCcu--GCGCGGCCgCGUAcccGAUGu -3' miRNA: 3'- -CGCGGaccuCGUGCCGGgGCAU---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 58216 | 0.66 | 0.687054 |
Target: 5'- cGCGCCaGcAGCGC-GCCCgCGgcGGCGg -3' miRNA: 3'- -CGCGGaCcUCGUGcCGGG-GCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 103055 | 0.66 | 0.687054 |
Target: 5'- aGCGCCUGucccGGCACGGCgCCCa------ -3' miRNA: 3'- -CGCGGACc---UCGUGCCG-GGGcaucugc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 55057 | 0.66 | 0.687054 |
Target: 5'- gGgGCCgGcGAGCuCGGCCgCCGaAGGCa -3' miRNA: 3'- -CgCGGaC-CUCGuGCCGG-GGCaUCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 46382 | 0.66 | 0.687054 |
Target: 5'- uCGCuCUcGGcGC-CGGCCCCGUcgccGACGg -3' miRNA: 3'- cGCG-GA-CCuCGuGCCGGGGCAu---CUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 30086 | 0.66 | 0.677242 |
Target: 5'- gGCGCacccGGAGCGCGuGCUCCG--GGCa -3' miRNA: 3'- -CGCGga--CCUCGUGC-CGGGGCauCUGc -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 14176 | 0.66 | 0.677242 |
Target: 5'- cGCGUCUcGGGGCGCgggucaGGCCCagggaGgaAGACGg -3' miRNA: 3'- -CGCGGA-CCUCGUG------CCGGGg----Ca-UCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 128567 | 0.66 | 0.677242 |
Target: 5'- gGCGCuCUGGGGCcCGGUUgCGcuGGCGg -3' miRNA: 3'- -CGCG-GACCUCGuGCCGGgGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 90881 | 0.66 | 0.677242 |
Target: 5'- uGCGCgCUGGgcgacggcauGGCGCGGCagguCUCGgcGGCGc -3' miRNA: 3'- -CGCG-GACC----------UCGUGCCG----GGGCauCUGC- -5' |
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23611 | 5' | -60.9 | NC_005261.1 | + | 52965 | 0.66 | 0.677242 |
Target: 5'- aGCGCCgcgccGGUGCGGCgCCGgcAGGCGg -3' miRNA: 3'- -CGCGGacc--UCGUGCCGgGGCa-UCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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