miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 5' -53.8 NC_005261.1 + 80068 0.7 0.839463
Target:  5'- gGCGcGGGgGGCGuGGGGGACGCGGa- -3'
miRNA:   3'- gCGUuUCUgCUGC-CUCUCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 134381 0.7 0.839463
Target:  5'- cCGCu--GGCGACGGcGAGA-GCGGGa -3'
miRNA:   3'- -GCGuuuCUGCUGCCuCUCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 1043 0.69 0.847641
Target:  5'- gGCGGcGGGCGGCGGcguuAGcGGCGCGGGg -3'
miRNA:   3'- gCGUU-UCUGCUGCC----UCuCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 14147 0.69 0.855618
Target:  5'- uCGCGAGGACGcuccagccgcgaACGGcgcgcgucucGGGGCGCGGGUc -3'
miRNA:   3'- -GCGUUUCUGC------------UGCCu---------CUCUGCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 993 0.69 0.855618
Target:  5'- aGCGGAGGaGACGGGGgcgGGGgGCGGGg -3'
miRNA:   3'- gCGUUUCUgCUGCCUC---UCUgCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 73666 0.69 0.855618
Target:  5'- gCGCAc-GACG-CGGAGggcGGGCGCGGGc -3'
miRNA:   3'- -GCGUuuCUGCuGCCUC---UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 1410 0.69 0.863388
Target:  5'- cCGCGgcGGCGGCGGGGGcGGCGCc--- -3'
miRNA:   3'- -GCGUuuCUGCUGCCUCU-CUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 33611 0.69 0.863388
Target:  5'- gGCGcGGGCGGCGGggcccGGGGGCGCGc-- -3'
miRNA:   3'- gCGUuUCUGCUGCC-----UCUCUGCGCuca -5'
23612 5' -53.8 NC_005261.1 + 22903 0.69 0.863388
Target:  5'- aCGaCGAGGACGAC-GAG-GACGaCGAGg -3'
miRNA:   3'- -GC-GUUUCUGCUGcCUCuCUGC-GCUCa -5'
23612 5' -53.8 NC_005261.1 + 57816 0.69 0.868699
Target:  5'- cCGUGAAGGCGAaGGGGuccacgugcuccgcGGGCGCGGGc -3'
miRNA:   3'- -GCGUUUCUGCUgCCUC--------------UCUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 110790 0.69 0.870943
Target:  5'- uGCuccgGGGGACGGCGGgcgaGGAGGCGgGGGc -3'
miRNA:   3'- gCG----UUUCUGCUGCC----UCUCUGCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 74919 0.69 0.870943
Target:  5'- gCGCGGGGGagggcgagGACGGGGAcugcGGCGCGGGc -3'
miRNA:   3'- -GCGUUUCUg-------CUGCCUCU----CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 98001 0.69 0.870943
Target:  5'- --gGGAGGCGGCGGGGGcgcuGGCgGCGAGg -3'
miRNA:   3'- gcgUUUCUGCUGCCUCU----CUG-CGCUCa -5'
23612 5' -53.8 NC_005261.1 + 30450 0.69 0.878279
Target:  5'- gGgGAGGACGAggacgGGGGGGACGgGGGg -3'
miRNA:   3'- gCgUUUCUGCUg----CCUCUCUGCgCUCa -5'
23612 5' -53.8 NC_005261.1 + 16177 0.69 0.878279
Target:  5'- gGCGcGGGCGugGcGGGGGugGgCGGGg -3'
miRNA:   3'- gCGUuUCUGCugC-CUCUCugC-GCUCa -5'
23612 5' -53.8 NC_005261.1 + 103863 0.69 0.878279
Target:  5'- cCGCGgcGGCGGCGGGGcGGCGCc--- -3'
miRNA:   3'- -GCGUuuCUGCUGCCUCuCUGCGcuca -5'
23612 5' -53.8 NC_005261.1 + 47886 0.69 0.878279
Target:  5'- cCGgGGAG-CGGCGGcGGcGGCGCGAGg -3'
miRNA:   3'- -GCgUUUCuGCUGCCuCU-CUGCGCUCa -5'
23612 5' -53.8 NC_005261.1 + 43772 0.69 0.878279
Target:  5'- uGCucguGGGGCGgcgcGCGGAGGGcgcCGCGGGUg -3'
miRNA:   3'- gCGu---UUCUGC----UGCCUCUCu--GCGCUCA- -5'
23612 5' -53.8 NC_005261.1 + 11078 0.69 0.878279
Target:  5'- gCGCGucuaGGGACggGACGGGGcgGGACGCGAc- -3'
miRNA:   3'- -GCGU----UUCUG--CUGCCUC--UCUGCGCUca -5'
23612 5' -53.8 NC_005261.1 + 7977 0.69 0.878279
Target:  5'- uCGCcGAGGCGGCccggugGGAGAGGgGgGAGa -3'
miRNA:   3'- -GCGuUUCUGCUG------CCUCUCUgCgCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.